From b934e8bc6e42f13f81b2466fd668844bc0abeaaf Mon Sep 17 00:00:00 2001
From: Cornelius Roemer <cornelius.roemer@gmail.com>
Date: Tue, 9 May 2023 10:49:07 +0200
Subject: [PATCH] Add C23707T as lineage defining mutation to FL.9

See https://github.com/cov-lineages/pango-designation/commit/5ff879e0c91f864e4864d13574a3a6b1c5825cd6#commitcomment-112430295
---
 lineage_notes.txt |   2 +-
 lineages.csv      | 678 ++++++++++++++++++++++++++++++----------------
 2 files changed, 444 insertions(+), 236 deletions(-)

diff --git a/lineage_notes.txt b/lineage_notes.txt
index 49a6c841..8a08b509 100644
--- a/lineage_notes.txt
+++ b/lineage_notes.txt
@@ -2734,7 +2734,7 @@ FL.5	Alias of XBB.1.9.1.5, N:T362I
 FL.6	Alias of XBB.1.9.1.6, ORF1a:I849V, Bahrain/Egypt/Oman/Austria
 FL.7	Alias of XBB.1.9.1.7, S:T51I
 FL.8	Alias of XBB.1.9.1.8, ORF3a:I62F, Europe
-FL.9	Alias of XBB.1.9.1.9, T29691C, England
+FL.9	Alias of XBB.1.9.1.9, C23707T, T29691C, England
 FL.10	Alias of XBB.1.9.1.10, ORF1a:C657Y
 FL.11	Alias of XBB.1.9.1.11, ORF1a:L394F, France/French Guiana, from #1947
 FL.12	Alias of XBB.1.9.1.12, ORF1a:C2210F
diff --git a/lineages.csv b/lineages.csv
index 220bfb6d..73c4cdf1 100644
--- a/lineages.csv
+++ b/lineages.csv
@@ -2141941,7 +2141941,6 @@ Indonesia/JK-GS-GSILab-1146158/2023,XBB.1.9.1
 England/PHEC-YY89R9Z/2023,XBB.1.9.1
 Denmark/DCGC-635813/2023,XBB.1.9.1
 Singapore/17015/2022,XBB.1.9.1
-England/PHEP-YYGE6UF/2023,XBB.1.9.1
 India/TG-CDFD-MMG-524/2023,XBB.1.9.1
 Netherlands/NH-AUMC-000238/2023,XBB.1.9.1
 Denmark/DCGC-638946/2023,XBB.1.9.1
@@ -2390555,240 +2390554,191 @@ Germany/BB-RKI-I-1111159/2023,FL.8
 Germany/BB-RKI-I-1111164/2023,FL.8
 Germany/BB-RKI-I-1115066/2023,FL.8
 Germany/BB-RKI-I-1111144/2023,FL.8
-Ireland/D-SVUH-74/2023,FL.9
-France/ARA-HCL723000503101/2023,FL.9
-USA/AZ-CDC-QDX49057421/2023,FL.9
-Spain/MD-HGUGM-7424089/2023,FL.9
-England/QEUH-326B2A88/2023,FL.9
-USA/CA-HLX-STM-7C5RYUZNC/2023,FL.9
-Singapore/R28MR14/2023,FL.9
-France/ARA-HCL723000572301/2023,FL.9
-France/BFC-IPP10427/2023,FL.9
-France/BFC-IPP10428/2023,FL.9
-Ireland/OY-NVRL-SIRL00017300/2023,FL.9
-England/PHEP-YYGOKJ7/2023,FL.9
-Scotland/SCOT-29395/2023,FL.9
-Ireland/CO-CUH-S23C0170/2023,FL.9
-Spain/MD-HGUGM-7419946/2023,FL.9
-USA/NJ-CDC-LC1032338/2023,FL.9
-France/OCC-CHU-TLS-6003705790/2023,FL.9
-Ireland/G-NVRL-SIRL00015323/2023,FL.9
-USA/NY-GBW-H10-011-2490/2023,FL.9
-USA/NY-GBW-H20-280-8945/2023,FL.9
-England/BRBR-32711637/2023,FL.9
-England/PHEP-YYGTM4Z/2023,FL.9
-Northern_Ireland/NIRE-0201d0/2023,FL.9
-Scotland/SCOT-27985/2023,FL.9
-Ireland/TA-Enfer-080223003_B9/2023,FL.9
-England/QEUH-326CCA30/2023,FL.9
-England/PHEC-YYERK5X/2023,FL.9
-England/PHEC-YYEGN9M/2023,FL.9
-Ireland/D-NVRL-SIRL00009499/2023,FL.9
-England/PHEC-YYE8WC6/2023,FL.9
-England/PHEP-YYGP1YQ/2023,FL.9
-Wales/PHWC-PKC6JW/2023,FL.9
-England/PHEC-YYEJSFG/2023,FL.9
-Wales/QEUH-326F470B/2023,FL.9
-France/HDF-IPP05988/2023,FL.9
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-Wales/PHWC-PKXC9U/2023,FL.9
-Ireland/G-GUH-N1053/2023,FL.9
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-USA/WI-CDC-LC1028984/2023,FL.9
-Spain/AR-HCULB-00009692/2023,FL.9
-England/PHEC-YYEO8ZB/2023,FL.9
-England/QEUH-326C7B32/2023,FL.9
-Luxembourg/LNS7608037/2023,FL.9
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-USA/PA-CDC-LC1035796/2023,FL.9
-France/HDF-IPP08493/2023,FL.9
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-England/QEUH-326D018F/2023,FL.9
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