diff --git a/lineage_notes.txt b/lineage_notes.txt index 43d65268..19dd97d6 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -1405,6 +1405,7 @@ BQ.1.1.72 Alias of B.1.1.529.5.3.1.1.1.1.1.1.72 ORF1b:D100A FC.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.72.1 S:478R, Indonesia BQ.1.1.73 Alias of B.1.1.529.5.3.1.1.1.1.1.1.73, found mainly in Canada and Spain, from pango-designation issue #1740 BQ.1.1.74 Alias of B.1.1.529.5.3.1.1.1.1.1.1.74, S:182E, found mainly in Botswana and UK, from pango-designation issue #1817 +FN.1 Alias of B.1.1.529.5.3.1.1.1.1.1.1.74.1, S:478R, Botswana/England, from #1817 BQ.1.2 Alias of B.1.1.529.5.3.1.1.1.1.1.2, found globally, defined by S:I666V, from issue #1082 BQ.1.2.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1 found mainly in Japan, SouthKorea and Mongolia, from pango-designation issue #1392 FB.1 Alias of B.1.1.529.5.3.1.1.1.1.1.2.1.1 S:D253G, Singapore/Taiwan/Japan diff --git a/lineages.csv b/lineages.csv index 0886911f..7e361e99 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2238439,7 +2238439,6 @@ Japan/TKYmbc14747/2022,BQ.1.1 Germany/BY-RKI-I-1100147/2023,BQ.1.1 Sweden/38605581XXP/2022,BQ.1.1 Canada/ON-PHL-22-54370/2022,BQ.1.1 -England/PHEC-YYER574/2023,BQ.1.1.74 USA/MN-MDH-34264/2023,BQ.1.1 France/IDF-LBZCentre-L2210240034/2022,BQ.1.1 Canada/SK-RRPL-578216/2022,BQ.1.1 @@ -2241242,7 +2241241,6 @@ France/GES-IPP-03579/2023,BQ.1.1 USA/IL-RIPHL_13324_G/2023,BQ.1.1 Brazil/RJ-LNN11266/2023,BQ.1.1 USA/TN-SPHL-4641/2022,BQ.1.1 -England/PHEC-YYERTAQ/2023,BQ.1.1.74 USA/CA-CDPH-6000014380/2022,BQ.1.1 Germany/BE-RKI-I-1067376/2022,BQ.1.1 Canada/ON-PHL-23-15775/2023,BQ.1.1 @@ -2241370,7 +2241368,6 @@ Germany/BW-RKI-I-1076534/2022,BQ.1.1 Germany/BW-RKI-I-1073197/2022,BQ.1.1 USA/NC-CDC-LC0968108/2022,BQ.1.1 Denmark/DCGC-613761/2022,BQ.1.1 -England/PHEC-YYE8JR3/2023,BQ.1.1.74 Brazil/BA-FIOCRUZ-28929/2022,BQ.1.1 USA/NC-CORVASEQ-1085-8526-z/2022,BQ.1.1 Sweden/49221494987/2022,BQ.1.1 @@ -2364027,58 +2364024,28 @@ Germany/SH-RKI-I-1117519/2023,FL.2 Germany/NW-RKI-I-1124338/2023,FL.2 Germany/SH-RKI-I-1117530/2023,FL.2 Botswana/R198B58_BHP_AAC91293/2022,BQ.1.1.74 -England/PHEC-YYEPWJA/2023,BQ.1.1.74 France/ARA-GENBIO-14292772270/2022,BQ.1.1.74 Botswana/R194B16_BHP_122082431/2022,BQ.1.1.74 -England/PHEC-YYERKJW/2023,BQ.1.1.74 -England/PHEC-YYE8JB9/2023,BQ.1.1.74 -England/PHEC-YYERWRW/2023,BQ.1.1.74 USA/GA-GBW-VWPOAAAZ535528/2022,BQ.1.1.74 Luxembourg/LNS2876500/2022,BQ.1.1.74 -England/PHEC-YYEPU87/2023,BQ.1.1.74 Reunion/ChuReu-723011469901/2023,BQ.1.1.74 -England/PHEC-YYEGHFG/2023,BQ.1.1.74 -England/PHEC-YYEMRHF/2023,BQ.1.1.74 USA/CA-CDC-QDX47594942/2023,BQ.1.1.74 -England/PHEC-YYEDG18/2023,BQ.1.1.74 England/PHEP-YYF5KDW/2022,BQ.1.1.74 Japan/IC-15011/2022,BQ.1.1.74 -England/BRBR-327021DE/2023,BQ.1.1.74 -England/BRBR-327022BD/2023,BQ.1.1.74 -England/BRBR-3270BAE9/2023,BQ.1.1.74 -England/PHEC-YYERKXE/2023,BQ.1.1.74 USA/CA-CDPH-500085924/2022,BQ.1.1.74 USA/CA-CDPH-500104763/2023,BQ.1.1.74 -England/PHEC-YYEMP88/2023,BQ.1.1.74 USA/HI-H2218028/2022,BQ.1.1.74 -England/PHEC-YYERTQD/2023,BQ.1.1.74 -England/PHEC-YYEN78J/2023,BQ.1.1.74 Luxembourg/LNS3568430/2022,BQ.1.1.74 -England/BRBR-32709605/2023,BQ.1.1.74 Botswana/R198B66_BHP_122084310/2022,BQ.1.1.74 USA/CA-CDPH-FS48100422/2023,BQ.1.1.74 -England/BRBR-327020D1/2023,BQ.1.1.74 -England/PHEC-YYEMFM8/2023,BQ.1.1.74 -England/PHEC-YYEJNI3/2023,BQ.1.1.74 Austria/AGES-1116364/2023,BQ.1.1.74 USA/CA-CDPH-FS48100429/2023,BQ.1.1.74 -England/BRBR-32702059/2023,BQ.1.1.74 -England/PHEC-YYEM57C/2023,BQ.1.1.74 USA/CA-CDPH-500103536/2023,BQ.1.1.74 -England/PHEC-YYEK1I8/2023,BQ.1.1.74 -England/BRBR-3270BD59/2023,BQ.1.1.74 USA/CA-CDC-QDX46011088/2023,BQ.1.1.74 Botswana/R199B07_BHP_122085578/2022,BQ.1.1.74 USA/NY-GBW-VWPOAAAZ169032/2022,BQ.1.1.74 -England/PHEC-YYE8JN7/2023,BQ.1.1.74 -England/PHEC-YYEPTOC/2023,BQ.1.1.74 Japan/IC-15159/2022,BQ.1.1.74 England/PHEC-YY8J6WY/2022,BQ.1.1.74 -England/PHEC-YYE8E9D/2023,BQ.1.1.74 -Botswana/R200B28_BHP_123000662/2023,BQ.1.1.74 -England/PHEC-YYEG4TX/2023,BQ.1.1.74 -England/PHEC-YYEKCD1/2023,BQ.1.1.74 -England/PHEC-YYEPM6S/2023,BQ.1.1.74 USA/CA-CDPH-500103884/2023,BQ.1.1.74 USA/CA-CCPHL-4530/2023,BQ.1.1.74 USA/CA-CDPH-FS47315652/2023,BQ.1.1.74 @@ -2364087,12 +2364054,79 @@ USA/CA-CDPH-500103829/2023,BQ.1.1.74 Mauritius/CHL-9273/2023,BQ.1.1.74 Botswana/R199B10_BHP_122085966/2022,BQ.1.1.74 USA/CA-CDPH-500103948/2023,BQ.1.1.74 -England/QEUH-326CC274/2023,BQ.1.1.74 India/TG-CDFD-MMG-508/2023,BQ.1.1.74 USA/CA-CDPH-FS48098388/2023,BQ.1.1.74 USA/HI-H2218300/2022,BQ.1.1.74 -England/PHEC-YYERTS1/2023,BQ.1.1.74 USA/CA-CDPH-FS48098381/2023,BQ.1.1.74 Reunion/ChuReu-723011469801/2023,BQ.1.1.74 USA/NY-GBW-VWPOAAAZ516370/2022,BQ.1.1.74 USA/CA-CDPH-500103027/2023,BQ.1.1.74 +Botswana/R202B89_BHP_158106205/2023,FN.1 +Botswana/R205B33_BHP_1104632/2023,FN.1 +Botswana/R204B28_BHP_362544789S0/2023,FN.1 +England/BRBR-3270F5D5/2023,FN.1 +England/QEUH-326CC274/2023,FN.1 +England/PHEC-YYERTQD/2023,FN.1 +England/PHEC-YYERWRW/2023,FN.1 +Botswana/R199B49_BHP_SPH5781812/2023,FN.1 +Botswana/R204B40_BHP_AAD0819/2023,FN.1 +Botswana/R200B16_BHP_1103747/2022,FN.1 +Botswana/R200B17_BHP_1103846/2022,FN.1 +Botswana/R205B14_BHP_1106362/2023,FN.1 +Botswana/R202B20_BHP_1106361/2023,FN.1 +SouthAfrica/NICD-N53152/2023,FN.1 +SouthAfrica/NICD-N52950/2023,FN.1 +Botswana/R204B41_BHP_AAD0817/2023,FN.1 +Botswana/R205B90_BHP_AAD0818/2023,FN.1 +Botswana/R204B27_BHP_362528697G0/2022,FN.1 +Botswana/R200B28_BHP_123000662/2023,FN.1 +Botswana/R202B34_BHP_1104678/2023,FN.1 +Botswana/R199B46_BHP_SPH2610435/2023,FN.1 +Botswana/R202B90_BHP_158306014/2023,FN.1 +Botswana/R205B87_BHP_158106082R/2023,FN.1 +Botswana/R202B87_BHP_158106082/2023,FN.1 +Botswana/R202B33_BHP_1104677/2023,FN.1 +Botswana/R200B07_BHP_158104356/2022,FN.1 +Botswana/R205B20_BHP_1106140/2023,FN.1 +Botswana/R202B39_BHP_1106140/2023,FN.1 +England/PHEC-YYER574/2023,FN.1 +England/PHEC-YYERTS1/2023,FN.1 +England/PHEC-YYEGHFG/2023,FN.1 +England/PHEC-YYE8JN7/2023,FN.1 +England/PHEC-YYE8JB9/2023,FN.1 +England/PHEC-YYE8JR3/2023,FN.1 +England/PHEC-YYEJNI3/2023,FN.1 +England/PHEC-YYEPTOC/2023,FN.1 +Scotland/SCOT-27927/2023,FN.1 +England/PHEC-YYEN78J/2023,FN.1 +England/PHEC-YYEG4TX/2023,FN.1 +England/PHEC-YYEKCD1/2023,FN.1 +England/PHEC-YYEMRHF/2023,FN.1 +England/BRBR-327020D1/2023,FN.1 +England/PHEC-YYEDG18/2023,FN.1 +England/BRBR-3270BD59/2023,FN.1 +England/PHEC-YYERTAQ/2023,FN.1 +England/BRBR-327022BD/2023,FN.1 +England/BRBR-327021DE/2023,FN.1 +England/BRBR-32702059/2023,FN.1 +England/PHEC-YYEMFM8/2023,FN.1 +England/PHEC-YYEK1I8/2023,FN.1 +England/PHEC-YYE8HZ9/2023,FN.1 +England/PHEC-YYE8E9D/2023,FN.1 +England/PHEC-YYERKXE/2023,FN.1 +England/PHEC-YYERKJW/2023,FN.1 +England/PHEC-YYEDUJP/2023,FN.1 +England/BRBR-32709605/2023,FN.1 +England/BRBR-3270BAE9/2023,FN.1 +England/PHEC-YYEO1SA/2023,FN.1 +England/PHEC-YYETDK6/2023,FN.1 +England/PHEC-YYEM57C/2023,FN.1 +England/PHEC-YYEQNIX/2023,FN.1 +England/PHEC-YYEMP88/2023,FN.1 +England/PHEC-YYEPM6S/2023,FN.1 +England/PHEC-YYEPWJA/2023,FN.1 +England/PHEC-YYEQR77/2023,FN.1 +England/PHEC-YYEXE8R/2023,FN.1 +England/PHEC-YYEOWR5/2023,FN.1 +England/PHEC-YYEPU87/2023,FN.1 +England/PHEC-YYEX8TO/2023,FN.1 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index 9b6f04d1..426687ea 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -143,6 +143,7 @@ "FK": "B.1.1.529.2.75.3.4.1.1.1.1.17", "FL": "XBB.1.9.1", "FM": "B.1.1.529.5.3.1.1.1.1.1.1.53", + "FN": "B.1.1.529.5.3.1.1.1.1.1.1.74", "XA": ["B.1.1.7","B.1.177"], "XB": ["B.1.634","B.1.631"], "XC": ["AY.29","B.1.1.7"],