diff --git a/lineage_notes.txt b/lineage_notes.txt index bf3d180f..26662522 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2690,6 +2690,7 @@ XBB.1.5.61 T11536C, USA XBB.1.5.62 C29095T XBB.1.5.63 C346T, Germany/Mauritius XBB.1.5.64 C29708T +XBB.1.5.65 C583T, Germany XBB.1.6 USA, S:L216F, S:H146K, from issue #1428 XBB.1.7 USA-NY, S:V608I XBB.1.8 Denmark, S:186insSGG, C3241T diff --git a/lineages.csv b/lineages.csv index 230372a0..17ee0e60 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2245822,7 +2245822,6 @@ Canada/ON-PHL-23-07425/2023,XBB.1.5 Germany/RP-RKI-I-1106225/2023,XBB.1.5 Russia/MOW-RII-MH128296S/2023,XBB.1.5 USA/CO-CDPHE-2103788046/2023,XBB.1.5 -Germany/TH-RKI-I-1109576/2023,XBB.1.5 USA/NJ-CDC-QDX46499992/2023,XBB.1.5 USA/TX-CDC-QDX45529471/2023,XBB.1.5 USA/OH-CDC-QDX46775964/2023,XBB.1.5 @@ -2245854,7 +2245853,6 @@ Canada/BC-BCCDC-599238/2023,XBB.1.5 USA/MA-CDCBI-CRSP_B6WBC6LGT2MRYVSQ/2023,XBB.1.5 USA/NV-NSPHL-23-S002517/2023,XBB.1.5 Canada/QC-L00591217001/2023,XBB.1.5 -Germany/BW-RKI-I-1110201/2023,XBB.1.5 Austria/LB-R00125-S291/2023,XBB.1.5 USA/GA-CDC-QDX46499806/2023,XBB.1.5 Spain/CT-HUB07690/2023,XBB.1.5 @@ -2246120,7 +2246118,6 @@ Netherlands/FL-RIVM-126863/2023,XBB.1.5 Austria/LB-R00128-S103/2023,XBB.1.5 Canada/AB-ABPHL-91837/2023,XBB.1.5 USA/NY-CDC-QDX46447220/2023,XBB.1.5 -Germany/BY-MVP-000018962/2023,XBB.1.5 USA/VA-CDC-LC0978734/2023,XBB.1.5 USA/MD-IGS-142302000778A/2023,XBB.1.5 USA/TX-HMH-M-124421/2023,XBB.1.5 @@ -2246144,7 +2246141,6 @@ Germany/BY-RKI-I-1103374/2023,XBB.1.5 USA/TX-CDC-QDX47043074/2023,XBB.1.5 USA/CT-YNH-2714/2023,XBB.1.5 USA/NJ-CDC-LC0967334/2022,XBB.1.5 -England/QEUH-326C94BD/2023,XBB.1.5 Israel/ICH-741195069/2022,XBB.1.5 USA/MI-UM-L361537790/2023,XBB.1.5 USA/LA-OD-O-1745546774/2023,XBB.1.5 @@ -2246260,7 +2246256,6 @@ Australia/NSW-ICPMR-42918/2023,XBB.1.5 USA/TX-CDC-QDX45908506/2023,XBB.1.5 USA/TX-HMH-MCoV-121326/2022,XBB.1.5 USA/MI-UM-L362613413/2023,XBB.1.5 -Italy/EMR_AUSLRomagna_C011-22/2023,XBB.1.5 USA/PA-CDC-QDX46010099/2023,XBB.1.5 Israel/ICH-741196269/2023,XBB.1.5 USA/TX-CDC-QDX47145197/2023,XBB.1.5 @@ -2246426,7 +2246421,6 @@ USA/FL-CDC-QDX46945899/2023,XBB.1.5 USA/AZ-CDC-LC0999472/2023,XBB.1.5 Germany/BE-ChVir-LB-230310-4872/2023,XBB.1.5 USA/VA-CDC-QDX45961201/2023,XBB.1.5 -Germany/TH-RKI-I-1118366/2023,XBB.1.5 USA/NJ-CDC-LC0978002/2022,XBB.1.5 USA/NJ-CDC-LC0997340/2023,XBB.1.5 Chile/NB-15313/2023,XBB.1.5 @@ -2246640,7 +2246634,6 @@ England/QEUH-326F0C88/2023,XBB.1.5 USA/NJ-CDC-LC0964830/2022,XBB.1.5 England/QEUH-326CC6B4/2023,XBB.1.5 England/BRBR-326D6C2E/2023,XBB.1.5 -Germany/HE-RKI-I-1097958/2023,XBB.1.5 USA/NC-CORVASEQ-UNC-9031/2023,XBB.1.5 Netherlands/GR-UMCG-MMB_7361/2023,XBB.1.5 USA/MD-CDC-QDX46826093/2023,XBB.1.5 @@ -2246744,7 +2246737,6 @@ USA/FL-ASC-210996533/2023,XBB.1.5 USA/TX-CDC-QDX46229811/2023,XBB.1.5 USA/CA-CDPH-FS48082325/2023,XBB.1.5 USA/CA-HLX-STM-DB9MBY7TG/2022,XBB.1.5 -Germany/RP-RKI-I-1106222/2023,XBB.1.5 Austria/LB-R00126-S357/2023,XBB.1.5 USA/CA-CDC-LC0972156/2022,XBB.1.5 USA/NJ-CDC-LC0991248/2023,XBB.1.5 @@ -2246772,7 +2246764,6 @@ Denmark/DCGC-628996/2022,XBB.1.5 USA/WA-CDC-LC1014137/2023,XBB.1.5 Scotland/SCOT-24375/2023,XBB.1.5 USA/CA-CDC-VSX-A078162/2023,XBB.1.5 -Germany/NW-RKI-I-1112815/2023,XBB.1.5 USA/NY-CDC-QDX46992355/2023,XBB.1.5 USA/VA-VTVAS3-GSC42353/2023,XBB.1.5 USA/TX-KVI300379/2023,XBB.1.5 @@ -2248093,7 +2248084,6 @@ Netherlands/NH-AUMC-000477/2023,XBB.1.5 USA/FL-CDC-QDX46827173/2023,XBB.1.5 USA/NY-PRL-221214_00C23/2022,XBB.1.5 USA/GA-CDC-QDX46877433/2023,XBB.1.5 -Germany/SH-RKI-I-1117733/2023,XBB.1.5 USA/MD-CDC-QDX47260384/2023,XBB.1.5 England/PHEC-YYEDQ19/2023,XBB.1.5 USA/FL-CDC-QDX46060311/2023,XBB.1.5 @@ -2248145,7 +2248135,6 @@ USA/NY-PRL-221221_00B18/2022,XBB.1.5 Germany/BY-RKI-I-1109015/2023,XBB.1.5 USA/MD-CDC-LC1023547/2023,XBB.1.5 USA/RI-RISHL-122951/2022,XBB.1.5 -Austria/Medilab_1666/2023,XBB.1.5 Austria/MUIV-1637/2023,XBB.1.5 Wales/PHWC-PKCY3T/2023,XBB.1.5 USA/UT-CDC-QDX45962628/2023,XBB.1.5 @@ -2248173,7 +2248162,6 @@ Sweden/PEP562163/2023,XBB.1.5 USA/TX-HMH-MCoV-122488/2023,XBB.1.5 Sweden/01119602/2023,XBB.1.5 USA/VA-CDC-LC1000456/2023,XBB.1.5 -Germany/TH-RKI-I-1108226/2023,XBB.1.5 Canada/ON-PHL-23-10397/2023,XBB.1.5 USA/TX-TAMGHRC-SHS_89433/2023,XBB.1.5 Canada/ON-KHS-23-00426-v1/2023,XBB.1.5 @@ -2248744,7 +2248732,6 @@ USA/TN-CDC-VSX-A073846/2023,XBB.1.5 Canada/ON-PHL-23-10298/2023,XBB.1.5 Canada/ON-PHL-23-05330/2023,XBB.1.5 USA/WA-CDC-UW23022537383/2023,XBB.1.5 -Germany/BE-RKI-I-1111225/2023,XBB.1.5 USA/NJ-CDC-QDX46229481/2023,XBB.1.5 USA/CA-CDC-LC1010472/2023,XBB.1.5 USA/TN-CDC-QDX46944317/2023,XBB.1.5 @@ -2249152,7 +2249139,6 @@ USA/TX-HMH-M-126383/2023,XBB.1.5 Canada/QC-L00589594001/2023,XBB.1.5 USA/HI-H2319750/2023,XBB.1.5 USA/NY-CDC-QDX45592841/2023,XBB.1.5 -Austria/LB-R00127-S201/2023,XBB.1.5 USA/CT-YPL-1160/2023,XBB.1.5 USA/TX-HMH-MCoV-121843/2023,XBB.1.5 USA/IL-2032023248/2023,XBB.1.5 @@ -2249227,7 +2249213,6 @@ 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USA/NY-PRL-221221_00G22/2022,XBB.1.5 USA/IL-CDC-LC1007231/2023,XBB.1.5 USA/CO-CDPHE-2103780056/2023,XBB.1.5 USA/MD-HP43393-PIDLJAFRIJ/2023,XBB.1.5 -Germany/HE-RKI-I-1085562/2023,XBB.1.5 Austria/AGES-1114435/2023,XBB.1.5 USA/VA-CDC-QDX46010551/2023,XBB.1.5 Wales/QEUH-326E32FF/2023,XBB.1.5 @@ -2250228,7 +2250209,6 @@ USA/IL-CDC-QDX46230276/2023,XBB.1.5 Netherlands/ZH-RIVM-126512/2023,XBB.1.5 USA/NY-CDC-QDX46501550/2023,XBB.1.5 USA/NJ-PHEL-V23001042-rep1/2023,XBB.1.5 -Germany/TH-RKI-I-1118164/2023,XBB.1.5 USA/NY-Wadsworth-23008722-01/2023,XBB.1.5 Austria/MUIV-1758/2023,XBB.1.5 USA/TN-CDC-QDX46275672/2023,XBB.1.5 @@ -2250352,7 +2250332,6 @@ USA/TX-HMH-MCoV-122089/2022,XBB.1.5 USA/MD-CDC-QDX45638699/2023,XBB.1.5 Canada/ON-PHL-23-05531/2023,XBB.1.5 USA/MA-CDCBI-CRSP_G5VSCZXENCOE45R3/2023,XBB.1.5 -Germany/SH-RKI-I-1112549/2023,XBB.1.5 USA/NJ-PHEL-V23001107/2023,XBB.1.5 USA/NJ-CDC-VSX-A073274/2023,XBB.1.5 Canada/ON-PHL-23-08636/2023,XBB.1.5 @@ -2251236,7 +2251215,6 @@ Brazil/SP-IB_CEVC_2205343/2022,XBB.1.5 USA/NY-Wadsworth-004155-01/2023,XBB.1.5 USA/NC-CORVASEQ-UNC-9059/2023,XBB.1.5 USA/MD-CDC-QDX45638873/2023,XBB.1.5 -Austria/LB-R00123-S296/2023,XBB.1.5 Spain/VC-CVA_ALIC-116288/2023,XBB.1.5 USA/NY-CDC-LC0986426/2023,XBB.1.5 USA/MN-MDH-34282/2023,XBB.1.5 @@ -2251502,7 +2251480,6 @@ Ireland/LK-NVRL-SIRL00008339/2023,XBB.1.5 Canada/ON-PHL-23-10818/2023,XBB.1.5 USA/NE-NPHL23-329/2023,XBB.1.5 USA/CA-CDC-QDX46724890/2023,XBB.1.5 -Germany/NW-RKI-I-1118006/2023,XBB.1.5 USA/WA-CDC-LC0998743/2023,XBB.1.5 USA/CA-CDPH-FS25391348/2023,XBB.1.5 Denmark/DCGC-639912/2023,XBB.1.5 @@ -2251598,7 +2251575,6 @@ USA/VA-CDC-QDX46611573/2023,XBB.1.5 Spain/CT-HUB07844/2023,XBB.1.5 USA/NY-CDC-QDX46447156/2023,XBB.1.5 England/LSPA-3268E627/2023,XBB.1.5 -Germany/BW-RKI-I-1109928/2023,XBB.1.5 USA/CA-HLX-STM-T93YHJUDT/2023,XBB.1.5 USA/LA-PHL-LAPH000484/2023,XBB.1.5 USA/MA-CDCBI-CRSP_YMXYP2G3T5DPCCQM/2023,XBB.1.5 @@ -2252456,7 +2252432,6 @@ USA/NY-PRL-221209_00I08/2022,XBB.1.5 USA/TX-HHD-23020150320/2023,XBB.1.5 USA/NY-CDC-QDX46447817/2023,XBB.1.5 USA/ME-HETL-J18188/2023,XBB.1.5 -Germany/HE-RKI-I-1097951/2023,XBB.1.5 USA/WA-CDC-UW23022426268/2023,XBB.1.5 Canada/ON-KHS-23-02112-v1/2023,XBB.1.5 Italy/VEN-IZSVe-23RS8060-3_TV/2023,XBB.1.5 @@ -2252713,7 +2252688,6 @@ USA/FL-CDC-LC0996550/2023,XBB.1.5 USA/OK-CDC-QDX46500455/2023,XBB.1.5 Netherlands/NH-AUMC-000449/2023,XBB.1.5 USA/IL-CDC-LC1005600/2023,XBB.1.5 -Germany/NW-RKI-I-1095425/2023,XBB.1.5 England/PHEC-YYEGUX5/2023,XBB.1.5 USA/NC-MCPH-CLT-014288/2023,XBB.1.5 Canada/ON-KHS-23-01864-v1/2023,XBB.1.5 @@ -2252727,7 +2252701,6 @@ USA/CA-TCPHL022823-11/2023,XBB.1.5 Canada/ON-KHS-23-01549/2023,XBB.1.5 Germany/BY-RKI-I-1116558/2023,XBB.1.5 USA/FL-ASC-210962425/2022,XBB.1.5 -Denmark/DCGC-642495/2023,XBB.1.5 USA/NC-CDC-LC0996362/2023,XBB.1.5 England/QEUH-326BE47F/2023,XBB.1.5 USA/CO-CDPHE-2103774644/2023,XBB.1.5 @@ -2252921,7 +2252894,6 @@ Belgium/ZNA_26158418/2023,XBB.1.5 Canada/ON-PHL-14604/2023,XBB.1.5 USA/DC-CDC-LC1002930/2023,XBB.1.5 USA/NY-CDC-QDX45739600/2023,XBB.1.5 -Germany/SH-RKI-I-1104313/2023,XBB.1.5 USA/RI-CDC-LC0996266/2023,XBB.1.5 Mexico/QUE-LANGEBIO_IMSS_14170/2023,XBB.1.5 Finland/THL-02847/2023,XBB.1.5 @@ -2253034,7 +2253006,6 @@ USA/CO-CDPHE-2103785464/2023,XBB.1.5 USA/MA-CDCBI-CRSP_VAJ5RWZUHXXQMHDC/2023,XBB.1.5 USA/TX-CDC-QDX45529404/2023,XBB.1.5 USA/LA-OD-O-2452020451/2023,XBB.1.5 -Germany/RP-RKI-I-1113981/2023,XBB.1.5 USA/NJ-CDC-LC1006615/2023,XBB.1.5 Austria/AGES-1116265/2023,XBB.1.5 USA/VA-CDC-LC1023283/2023,XBB.1.5 @@ -2253145,7 +2253116,6 @@ USA/NC-CDC-LC1003551/2023,XBB.1.5 USA/MD-CDC-QDX46944901/2023,XBB.1.5 USA/CA-CDC-LC0975172/2022,XBB.1.5 Australia/NSW-ICPMR-43297/2023,XBB.1.5 -Germany/SN-RKI-I-1098428/2023,XBB.1.5 USA/DE-DHSS-B1268173/2023,XBB.1.5 USA/TX-HMH-MCoV-122391/2023,XBB.1.5 England/BRBR-326DFF59/2023,XBB.1.5 @@ -2254009,13 +2253979,11 @@ England/BRBR-326CDE24/2023,XBB.1.5 Australia/NSW-NSWHP-41844/2023,XBB.1.5 Germany/BW-RKI-I-1117319/2023,XBB.1.5 USA/CA-CDC-QDX46724980/2023,XBB.1.5 -Germany/SH-RKI-I-1108489/2023,XBB.1.5 USA/RI-CDC-LC1006515/2023,XBB.1.5 USA/FL-CDC-QDX46945459/2023,XBB.1.5 Luxembourg/LNS1028431/2023,XBB.1.5 USA/NY-CDC-QDX46010194/2023,XBB.1.5 USA/MA-CDCBI-CRSP_IIXVLQYXTYT3BUKN/2023,XBB.1.5 -Germany/SN-RKI-I-1094066/2023,XBB.1.5 USA/NJ-CDC-QDX46010343/2023,XBB.1.5 USA/LA-EVTL18710/2023,XBB.1.5 Ireland/D-NVRL-S23IRL00007784/2023,XBB.1.5 @@ -2389532,3 +2389500,730 @@ USA/MD-CDC-QDX48853589/2023,XBB.1.5.64 USA/CA-CDC-LC1036369/2023,XBB.1.5.64 USA/CA-CDC-QDX49226036/2023,XBB.1.5.64 USA/CA-CDC-QDX49226037/2023,XBB.1.5.64 +Germany/SN-RKI-I-1125095/2023,XBB.1.5.65 +Germany/BW-RKI-I-1127326/2023,XBB.1.5.65 +Ireland/D-BH-370077230/2023,XBB.1.5.65 +Germany/BW-RKI-I-1126857/2023,XBB.1.5.65 +Germany/BW-RKI-I-1127360/2023,XBB.1.5.65 +Germany/BW-RKI-I-1127321/2023,XBB.1.5.65 +Ireland/D-BH-370085230/2023,XBB.1.5.65 +Romania/B-547088/2023,XBB.1.5.65 +England/PHEC-YYEK9TN/2023,XBB.1.5.65 +Germany/NI-RKI-I-1131679/2023,XBB.1.5.65 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