From 5140e4085b4ed7bcb0e8bdc4bc8b4e5ae13898d8 Mon Sep 17 00:00:00 2001 From: Cornelius Roemer Date: Thu, 24 Aug 2023 00:20:55 +0200 Subject: [PATCH] Designate JB.2.1 (XBB.1.5.53.2.1, S:H245Y, S:E554D, South Africa) with 10 seqs --- lineage_notes.txt | 1 + lineages.csv | 89 ++++++++++++++++++++++++++++++++++------------- 2 files changed, 66 insertions(+), 24 deletions(-) diff --git a/lineage_notes.txt b/lineage_notes.txt index ec430f0a..1e7273df 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -2767,6 +2767,7 @@ XBB.1.5.52 C3589T XBB.1.5.53 S:F140I, S:L582F, S:R403K, South Africaļ¼Œfrom #1804 JB.1 Alias of XBB.1.5.53.1, S:N148T, South Africa JB.2 Alias of XBB.1.5.53.2, S:K478R, South Africa/USA +JB.2.1 Alias of XBB.1.5.53.2.1, S:H245Y, S:E554D, South Africa XBB.1.5.54 C14358T,C20016T,C29311T, Central/Eastern Europe XBB.1.5.55 ORF1a:T3356I, USA/Canada HP.1 Alias of XBB.1.5.55.1, N:L13F, US/Mexico From sars-cov-2-variants/lineage-proposals#277 diff --git a/lineages.csv b/lineages.csv index 0c7f1cb5..965700ef 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2454991,43 +2454991,19 @@ USA/UT-UPHL-230728889666/2023,JA.1 Spain/CT-HUGTiP-A1R146/2023,JA.1 Spain/CT-HUGTiP-E1R146/2023,JA.1 Spain/CT-HUB08496/2023,JA.1 -SouthAfrica/NICD-N54078/2023,JB.1 -SouthAfrica/NICD-N54817/2023,JB.1 South_Africa/NICD-N54817/2023,JB.1 South_Africa/NICD-N54078/2023,JB.1 South_Africa/NICD-N53225/2023,JB.1 -SouthAfrica/NICD-N53225/2023,JB.1 South_Africa/NICD-N55670/2023,JB.1 -SouthAfrica/NICD-N55670/2023,JB.1 South_Africa/NICD-N54910/2023,JB.1 -SouthAfrica/NICD-N54910/2023,JB.1 South_Africa/NICD-N55060/2023,JB.1 -SouthAfrica/NICD-N55060/2023,JB.1 South_Africa/NICD-R03524/2023,JB.1 -SouthAfrica/NICD-R03524/2023,JB.1 South_Africa/NICD-N55089/2023,JB.1 -SouthAfrica/NICD-N55089/2023,JB.1 South_Africa/NICD-N53310/2023,JB.1 -SouthAfrica/NICD-N53310/2023,JB.1 South_Africa/CERI-KRISP-K056817/2023,JB.1 South_Africa/NICD-N55041/2023,JB.1 -SouthAfrica/NICD-N55041/2023,JB.1 South_Africa/NICD-N55196/2023,JB.1 -SouthAfrica/NICD-N55196/2023,JB.1 South_Africa/NICD-N55458/2023,JB.1 -SouthAfrica/NICD-N55458/2023,JB.1 -USA/CA-CDPH-500118910/2023,JB.2 -USA/CA-CDPH-500119168/2023,JB.2 -South_Africa/NICD-N55516/2023,JB.2 -SouthAfrica/NICD-N55516/2023,JB.2 -South_Africa/NICD-N55659/2023,JB.2 -SouthAfrica/NICD-N55659/2023,JB.2 -SouthAfrica/NICD-N55161/2023,JB.2 -South_Africa/NICD-N55161/2023,JB.2 -South_Africa/NICD-N55446/2023,JB.2 -SouthAfrica/NICD-N55446/2023,JB.2 -South_Africa/NICD-N55609/2023,JB.2 -SouthAfrica/NICD-N55609/2023,JB.2 Israel/ICH-741198454/2023,BA.2.86 Denmark/DCGC-647646/2023,BA.2.86 Denmark/DCGC-647676/2023,BA.2.86 @@ -2456573,3 +2456549,68 @@ England/CLIMB-CM7YGOIF/2023,FL.1.5.2 England/CLIMB-CM7YG5DS/2023,FL.1.5.2 England/CLIMB-CM7YJ5Q8/2023,FL.1.5.2 England/CLIMB-CM7YFJ1W/2023,FL.1.5.2 +Shanghai/SCDC-HG0526-1217/2023,XBB.1.5.53 +SouthAfrica/NICD-N55164/2023,XBB.1.5.53 +SouthAfrica/NICD-N55514/2023,XBB.1.5.53 +NewZealand/23XA2402/2023,XBB.1.5.53 +SouthAfrica/NICD-R03793/2023,XBB.1.5.53 +SouthAfrica/NICD-N55546/2023,XBB.1.5.53 +SouthAfrica/NICD-N55391/2023,XBB.1.5.53 +SouthAfrica/NICD-N55182/2023,XBB.1.5.53 +SouthAfrica/NICD-N55086/2023,XBB.1.5.53 +SouthAfrica/CERI-KRISP-K057311/2023,XBB.1.5.53 +France/IDF-IPP16291/2023,XBB.1.5.53 +USA/CA-HLX-STM-37TXEM29J/2023,XBB.1.5.53 +France/OCC-HCL-723000827901/2023,XBB.1.5.53 +South_Africa/NICD-N55662/2023,XBB.1.5.53 +SouthAfrica/NICD-N55662/2023,XBB.1.5.53 +South_Africa/NICD-N55675/2023,XBB.1.5.53 +SouthAfrica/NICD-N55675/2023,XBB.1.5.53 +South_Africa/NICD-N55516/2023,JB.2 +SouthAfrica/NICD-N55516/2023,JB.2 +South_Africa/NICD-N55659/2023,JB.2 +SouthAfrica/NICD-N55659/2023,JB.2 +South_Africa/NICD-N56000/2023,JB.2 +South_Africa/NICD-N56001/2023,JB.2 +South_Africa/NICD-N55988/2023,JB.2 +USA/LA-EVTL19623/2023,JB.2 +USA/CA-CDPH-500118910/2023,JB.2 +USA/CA-CDPH-500119168/2023,JB.2 +SouthAfrica/CERI-KRISP-K057318/2023,JB.2 +South_Africa/NICD-N55998/2023,JB.2 +South_Africa/CERI-KRISP-K057318/2023,JB.2 +South_Africa/CERI-KRISP-K057317/2023,JB.2 +SouthAfrica/CERI-KRISP-K057317/2023,JB.2 +South_Africa/NICD-CRDM08298/2023,JB.2 +SouthAfrica/NICD-CRDM08298/2023,JB.2 +SouthAfrica/NICD-N54078/2023,JB.1 +SouthAfrica/NICD-N54817/2023,JB.1 +SouthAfrica/NICD-N53225/2023,JB.1 +SouthAfrica/CERI-KRISP-K057298/2023,JB.1 +SouthAfrica/NICD-N55670/2023,JB.1 +SouthAfrica/NICD-N54910/2023,JB.1 +SouthAfrica/NICD-N55060/2023,JB.1 +SouthAfrica/NICD-R03524/2023,JB.1 +SouthAfrica/NICD-N55089/2023,JB.1 +SouthAfrica/NICD-N53310/2023,JB.1 +SouthAfrica/NICD-N55041/2023,JB.1 +SouthAfrica/NICD-N55196/2023,JB.1 +SouthAfrica/NICD-N55458/2023,JB.1 +SouthAfrica/NICD-N55161/2023,JB.2.1 +South_Africa/NICD-N56024/2023,JB.2.1 +South_Africa/NICD-N56003/2023,JB.2.1 +South_Africa/NICD-N55161/2023,JB.2.1 +South_Africa/NICD-N55446/2023,JB.2.1 +SouthAfrica/NICD-N55446/2023,JB.2.1 +South_Africa/NICD-N56019/2023,JB.2.1 +South_Africa/NICD-N56002/2023,JB.2.1 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