diff --git a/lineage_notes.txt b/lineage_notes.txt index 03789150..8bcfc92d 100644 --- a/lineage_notes.txt +++ b/lineage_notes.txt @@ -3130,6 +3130,7 @@ XBB.1.16 Defined by S:E180V, S:478R, found in India, USA, Singapore, and Europe, XBB.1.16.1 Defined by S:T547I, from #1772 FU.1 Alias of XBB.1.16.1.1, T3802C FU.1.1 Alias of XBB.1.16.1.1.1, S:K1266R +FU.1.1.1 Alias of XBB.1.16.1.1.1.1, S:N74S, USA FU.2 Alias of XBB.1.16.1.2, C8692T FU.2.1 Alias of XBB.1.16.1.2.1, S:E619Q, Vietnam FU.3 Alias of XBB.1.16.1.3, C11665T, India-RJ @@ -3478,7 +3479,7 @@ XCM Recombinant lineage of XBB.2.3 and DV.7.1 (breakpoint between 22017-22031), XCN Recombinant lineage of FR.1.1 and EG.5.1.1 (breakpoint between 22630-22663), China (Anhui/Shanghai), from sars-cov-2-variants/lineage-proposals#842 XCP Recombinant lineage of EG.5.1.10 and JD.1.1 (breakpoint between 14190-14633), France/Denmark/England, from sars-cov-2-variants/lineage-proposals#772 XCQ Recombinant lineage of XBB.2.3 and XBB.1.5 (breakpoint between 23123-27431), Guatemala, from #2289 -XCR Recombinant lineage of GK.1.1.1 and FU.1 (breakpoint between 23674-24372), USA, from #2323 +XCR Recombinant lineage of GK.1.1.1 and FU.1.1.1 (breakpoint between 23674-24372), USA, from #2323 XCS Recombinant lineage of GK.1.9 and XBB.1.16.25 (breakpoint between 223674-25044), USA, from #2311 *A.2.1 Withdrawn: Lineage with sequences predominantly from Panama *A.8 Withdrawn: Indian lineage merged with A.9 diff --git a/lineages.csv b/lineages.csv index 926d3816..57d6dbd6 100644 --- a/lineages.csv +++ b/lineages.csv @@ -2471450,78 +2471450,78 @@ USA/TX-HMH-M-131588/2023,FU.1.1 USA/TX-HMH-M-131976/2023,FU.1.1 USA/TX-HMH-M-131326/2023,FU.1.1 USA/TX-HMH-M-130510/2023,FU.1.1 -USA/TX-UHS-UTHSA8179-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8176-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8181-P0/2023,FU.1.1 -Italy/VEN-IZSVe-23RS8181-12_PD/2023,FU.1.1 -USA/TX-UHS-UTHSA8204-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8234-P0/2023,FU.1.1 -USA/TX-CDC-LC1052241/2023,FU.1.1 -USA/2331878/2023,FU.1.1 -USA/TX-UHS-UTHSA8841-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8860-P0/2023,FU.1.1 -USA/TX-PHH-SPID1004416463/2023,FU.1.1 -USA/TX-UHS-UTHSA8138-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8129-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8157-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8125-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8820-P0/2023,FU.1.1 -USA/TX-PHH-SPID1004416210/2023,FU.1.1 -USA/TX-PHH-SPID1004434395/2023,FU.1.1 -USA/NY-CDC-QDX83350935/2023,FU.1.1 -USA/TX-PHH-SPID1004416043/2023,FU.1.1 -USA/MI-MDHHS-SC44666/2023,FU.1.1 -USA/CA-LACPHL-AY02715/2023,FU.1.1 -USA/TX-UHS-UTHSA8316-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8314-P0/2023,FU.1.1 -USA/IL-RIPHL_32347_G/2023,FU.1.1 -USA/NC-CDC-LC1059593/2023,FU.1.1 -USA/TX-UHS-UTHSA8819-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8575-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8981-P0/2023,FU.1.1 -USA/TX-PHH-SPID1004426192/2023,FU.1.1 -USA/TX-UTH-UTHSA8634-P0/2023,FU.1.1 -USA/TX-PHH-SPID1004416153/2023,FU.1.1 -PuertoRico/PR-CVL-019484/2023,FU.1.1 -USA/TX-DSHS-25964/2023,FU.1.1 -USA/LA-EVTL19916/2023,FU.1.1 -USA/TX-HMH-M-133731/2023,FU.1.1 -USA/TX-HMH-M-132641/2023,FU.1.1 -USA/TX-PHH-SPID1004426056/2023,FU.1.1 -USA/OH-ODH-SC3032242/2023,FU.1.1 -USA/TX_TIEHH_KVI201724/2023,FU.1.1 -USA/TX-UHS-UTHSA8440-P0/2023,FU.1.1 -USA/CA-HLX-STM-5WS26Y3FW/2023,FU.1.1 -USA/CA-HLX-STM-F96EHVPE8/2023,FU.1.1 -USA/NJ-CDC-LC1053500/2023,FU.1.1 -USA/CA-HLX-STM-CUH66M86P/2023,FU.1.1 -USA/CA-HLX-STM-YGYV6EJBV/2023,FU.1.1 -USA/TX-UHS-UTHSA8229-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8453-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8443-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8231-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA9011-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8608-P0/2023,FU.1.1 -USA/TX-UHS-UTHSA8248-P0/2023,FU.1.1 -USA/TX-HMH-M-130458/2023,FU.1.1 -USA/TX-HMH-M-131257/2023,FU.1.1 -USA/TX-HMH-M-132298/2023,FU.1.1 -USA/TX-HMH-M-133424/2023,FU.1.1 -USA/TX-HMH-M-131412/2023,FU.1.1 -USA/TX-HMH-M-132780/2023,FU.1.1 -USA/TX-HMH-M-133410/2023,FU.1.1 -USA/TX-HMH-M-132483/2023,FU.1.1 -USA/TX-HMH-M-132084/2023,FU.1.1 -USA/TX-HMH-M-131913/2023,FU.1.1 -USA/TX-HMH-M-131751/2023,FU.1.1 -USA/TX-HMH-M-131869/2023,FU.1.1 -USA/TX-HMH-M-133201/2023,FU.1.1 -USA/TX-HMH-M-131481/2023,FU.1.1 -USA/TX-CDC-QDX85012611/2023,FU.1.1 -USA/TX-HMH-M-131467/2023,FU.1.1 -USA/TX-CDC-LC1054107/2023,FU.1.1 -USA/TX-UHS-UTHSA8721-P0/2023,FU.1.1 -USA/TX-HMH-M-130136/2023,FU.1.1 -USA/TX-UHS-UTHSA8317-P0/2023,FU.1.1 -USA/FL-CDC-QDX84336039/2023,FU.1.1 -USA/FL-CDC-QDX84336014/2023,FU.1.1 +USA/TX-UHS-UTHSA8179-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8176-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8181-P0/2023,FU.1.1.1 +Italy/VEN-IZSVe-23RS8181-12_PD/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8204-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8234-P0/2023,FU.1.1.1 +USA/TX-CDC-LC1052241/2023,FU.1.1.1 +USA/2331878/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8841-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8860-P0/2023,FU.1.1.1 +USA/TX-PHH-SPID1004416463/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8138-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8129-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8157-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8125-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8820-P0/2023,FU.1.1.1 +USA/TX-PHH-SPID1004416210/2023,FU.1.1.1 +USA/TX-PHH-SPID1004434395/2023,FU.1.1.1 +USA/NY-CDC-QDX83350935/2023,FU.1.1.1 +USA/TX-PHH-SPID1004416043/2023,FU.1.1.1 +USA/MI-MDHHS-SC44666/2023,FU.1.1.1 +USA/CA-LACPHL-AY02715/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8316-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8314-P0/2023,FU.1.1.1 +USA/IL-RIPHL_32347_G/2023,FU.1.1.1 +USA/NC-CDC-LC1059593/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8819-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8575-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8981-P0/2023,FU.1.1.1 +USA/TX-PHH-SPID1004426192/2023,FU.1.1.1 +USA/TX-UTH-UTHSA8634-P0/2023,FU.1.1.1 +USA/TX-PHH-SPID1004416153/2023,FU.1.1.1 +PuertoRico/PR-CVL-019484/2023,FU.1.1.1 +USA/TX-DSHS-25964/2023,FU.1.1.1 +USA/LA-EVTL19916/2023,FU.1.1.1 +USA/TX-HMH-M-133731/2023,FU.1.1.1 +USA/TX-HMH-M-132641/2023,FU.1.1.1 +USA/TX-PHH-SPID1004426056/2023,FU.1.1.1 +USA/OH-ODH-SC3032242/2023,FU.1.1.1 +USA/TX_TIEHH_KVI201724/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8440-P0/2023,FU.1.1.1 +USA/CA-HLX-STM-5WS26Y3FW/2023,FU.1.1.1 +USA/CA-HLX-STM-F96EHVPE8/2023,FU.1.1.1 +USA/NJ-CDC-LC1053500/2023,FU.1.1.1 +USA/CA-HLX-STM-CUH66M86P/2023,FU.1.1.1 +USA/CA-HLX-STM-YGYV6EJBV/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8229-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8453-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8443-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8231-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA9011-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8608-P0/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8248-P0/2023,FU.1.1.1 +USA/TX-HMH-M-130458/2023,FU.1.1.1 +USA/TX-HMH-M-131257/2023,FU.1.1.1 +USA/TX-HMH-M-132298/2023,FU.1.1.1 +USA/TX-HMH-M-133424/2023,FU.1.1.1 +USA/TX-HMH-M-131412/2023,FU.1.1.1 +USA/TX-HMH-M-132780/2023,FU.1.1.1 +USA/TX-HMH-M-133410/2023,FU.1.1.1 +USA/TX-HMH-M-132483/2023,FU.1.1.1 +USA/TX-HMH-M-132084/2023,FU.1.1.1 +USA/TX-HMH-M-131913/2023,FU.1.1.1 +USA/TX-HMH-M-131751/2023,FU.1.1.1 +USA/TX-HMH-M-131869/2023,FU.1.1.1 +USA/TX-HMH-M-133201/2023,FU.1.1.1 +USA/TX-HMH-M-131481/2023,FU.1.1.1 +USA/TX-CDC-QDX85012611/2023,FU.1.1.1 +USA/TX-HMH-M-131467/2023,FU.1.1.1 +USA/TX-CDC-LC1054107/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8721-P0/2023,FU.1.1.1 +USA/TX-HMH-M-130136/2023,FU.1.1.1 +USA/TX-UHS-UTHSA8317-P0/2023,FU.1.1.1 +USA/FL-CDC-QDX84336039/2023,FU.1.1.1 +USA/FL-CDC-QDX84336014/2023,FU.1.1.1 diff --git a/pango_designation/alias_key.json b/pango_designation/alias_key.json index b2ba2433..e79fd8ff 100644 --- a/pango_designation/alias_key.json +++ b/pango_designation/alias_key.json @@ -302,7 +302,7 @@ "XCN": ["FR.1.1","EG.5.1.1"], "XCP": ["EG.5.1.10","JD.1.1"], "XCQ": ["XBB.2.3","XBB.1.5"], - "XCR": ["GK.1.1.1","FU.1"], + "XCR": ["GK.1.1.1","FU.1.1.1"], "XCS": ["GK.1.9","XBB.1.16.25"] }