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left mouse click action issue #101

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pjsjongsung opened this issue Jan 28, 2020 · 7 comments
Open

left mouse click action issue #101

pjsjongsung opened this issue Jan 28, 2020 · 7 comments

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@pjsjongsung
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pjsjongsung commented Jan 28, 2020 •
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Issue:
Hi. I am using fury library which uses vtk. I installed vtk using conda. In a fury driven window, the left mouse click action was supposed to give me the voxel values in a 3d image, but did not do anything.


Environment (conda list):

$ conda list
# packages in environment at /home/jimmy/miniconda3:
#
# Name                    Version                   Build  Channel
_libgcc_mutex             0.1                        main  
absl-py                   0.9.0                    pypi_0    pypi
asn1crypto                1.3.0                    py37_0  
astor                     0.8.1                    pypi_0    pypi
astroid                   2.3.3                    py37_0  
attrs                     19.3.0                     py_0  
backcall                  0.1.0                    py37_0  
blas                      1.0                         mkl  
bleach                    3.1.0                    py37_0  
blosc                     1.16.3               hd408876_0  
bzip2                     1.0.8                h7b6447c_0  
ca-certificates           2019.11.27                    0  
cachetools                4.0.0                    pypi_0    pypi
certifi                   2019.11.28               py37_0  
cffi                      1.13.2           py37h2e261b9_0  
chardet                   3.0.4                 py37_1003  
conda                     4.8.1                    py37_0  
conda-package-handling    1.6.0            py37h7b6447c_0  
cryptography              2.8              py37h1ba5d50_0  
cvxopt                    1.2.0            py37hfa32c7d_0  
cycler                    0.10.0                   py37_0  
dbus                      1.13.12              h746ee38_0  
decorator                 4.4.1                      py_0  
defusedxml                0.6.0                      py_0  
dipy                      1.1.0            py37hc1659b7_0    conda-forge
entrypoints               0.3                      py37_0  
expat                     2.2.6                he6710b0_0  
fontconfig                2.13.0               h9420a91_0  
freetype                  2.9.1                h8a8886c_1  
fury                      0.4.0                    pypi_0    pypi
gast                      0.2.2                    pypi_0    pypi
glib                      2.63.1               h5a9c865_0  
glpk                      4.65                 h3ceedfd_2  
gmp                       6.1.2                h6c8ec71_1  
google-auth               1.10.1                   pypi_0    pypi
google-auth-oauthlib      0.4.1                    pypi_0    pypi
google-pasta              0.1.8                    pypi_0    pypi
grpcio                    1.26.0                   pypi_0    pypi
gsl                       2.4                  h14c3975_4  
gst-plugins-base          1.14.0               hbbd80ab_1  
gstreamer                 1.14.0               hb453b48_1  
h5py                      2.9.0            py37h7918eee_0  
hdf5                      1.10.4               hb1b8bf9_0  
icu                       58.2                 h9c2bf20_1  
idna                      2.8                      py37_0  
importlib_metadata        1.3.0                    py37_0  
intel-openmp              2019.4                      243  
ipykernel                 5.1.3            py37h39e3cac_1  
ipython                   7.11.1           py37h39e3cac_0  
ipython_genutils          0.2.0                    py37_0  
isort                     4.3.21                   py37_0  
jedi                      0.15.2                   py37_0  
jinja2                    2.10.3                     py_0  
joblib                    0.14.1                     py_0  
jpeg                      9b                   h024ee3a_2  
json5                     0.8.5                      py_0  
jsonschema                3.2.0                    py37_0  
jupyter_client            5.3.4                    py37_0  
jupyter_core              4.6.1                    py37_0  
jupyterlab                1.2.4                      py_0    conda-forge
jupyterlab_server         1.0.6                      py_0  
keras-applications        1.0.8                    pypi_0    pypi
keras-preprocessing       1.1.0                    pypi_0    pypi
kiwisolver                1.1.0            py37he6710b0_0  
lazy-object-proxy         1.4.3            py37h7b6447c_0  
libedit                   3.1.20181209         hc058e9b_0  
libffi                    3.2.1                hd88cf55_4  
libgcc-ng                 9.1.0                hdf63c60_0  
libgfortran-ng            7.3.0                hdf63c60_0  
libpng                    1.6.37               hbc83047_0  
libsodium                 1.0.16               h1bed415_0  
libstdcxx-ng              9.1.0                hdf63c60_0  
libuuid                   1.0.3                h1bed415_2  
libxcb                    1.13                 h1bed415_1  
libxml2                   2.9.9                hea5a465_1  
lz4-c                     1.8.1.2              h14c3975_0  
lzo                       2.10                 h49e0be7_2  
markdown                  3.1.1                    pypi_0    pypi
markupsafe                1.1.1            py37h7b6447c_0  
matplotlib                3.1.1            py37h5429711_0  
mccabe                    0.6.1                    py37_1  
metis                     5.1.0                hf484d3e_4  
mistune                   0.8.4            py37h7b6447c_0  
mkl                       2019.4                      243  
mkl-service               2.3.0            py37he904b0f_0  
mkl_fft                   1.0.15           py37ha843d7b_0  
mkl_random                1.1.0            py37hd6b4f25_0  
mock                      3.0.5                    py37_0  
more-itertools            8.0.2                      py_0  
nbconvert                 5.6.1                    py37_0  
nbformat                  4.4.0                    py37_0  
ncurses                   6.1                  he6710b0_1  
nibabel                   3.0.0                      py_0    conda-forge
notebook                  6.0.2                    py37_0  
numexpr                   2.7.0            py37h9e4a6bb_0  
numpy                     1.18.1           py37h4f9e942_0  
numpy-base                1.18.1           py37hde5b4d6_1  
oauthlib                  3.1.0                    pypi_0    pypi
openssl                   1.1.1d               h7b6447c_3  
opt-einsum                3.1.0                    pypi_0    pypi
pandoc                    2.2.3.2                       0  
pandocfilters             1.4.2                    py37_1  
parso                     0.5.2                      py_0  
pcre                      8.43                 he6710b0_0  
pexpect                   4.7.0                    py37_0  
pickleshare               0.7.5                    py37_0  
pip                       19.3.1                   py37_0  
prometheus_client         0.7.1                      py_0  
prompt_toolkit            3.0.2                      py_0  
protobuf                  3.11.2                   pypi_0    pypi
ptyprocess                0.6.0                    py37_0  
pyasn1                    0.4.8                    pypi_0    pypi
pyasn1-modules            0.2.8                    pypi_0    pypi
pycosat                   0.6.3            py37h7b6447c_0  
pycparser                 2.19                     py37_0  
pydicom                   1.3.0                      py_0    conda-forge
pygments                  2.5.2                      py_0  
pylint                    2.4.4                    py37_0  
pyopenssl                 19.1.0                   py37_0  
pyparsing                 2.4.6                      py_0  
pyqt                      5.9.2            py37h05f1152_2  
pyrsistent                0.15.6           py37h7b6447c_0  
pysocks                   1.7.1                    py37_0  
pytables                  3.6.1            py37h71ec239_0  
python                    3.7.4                h265db76_1  
python-dateutil           2.8.1                      py_0  
pytz                      2019.3                     py_0  
pyzmq                     18.1.0           py37he6710b0_0  
qt                        5.9.7                h5867ecd_1  
readline                  7.0                  h7b6447c_5  
requests                  2.22.0                   py37_1  
requests-oauthlib         1.3.0                    pypi_0    pypi
rsa                       4.0                      pypi_0    pypi
ruamel_yaml               0.15.87          py37h7b6447c_0  
scikit-learn              0.22.1           py37hd81dba3_0  
scipy                     1.3.2            py37h7c811a0_0  
send2trash                1.5.0                    py37_0  
setuptools                44.0.0                   py37_0  
sip                       4.19.8           py37hf484d3e_0  
six                       1.13.0                   py37_0  
snappy                    1.1.7                hbae5bb6_3  
sqlite                    3.30.1               h7b6447c_0  
suitesparse               5.2.0                h9e4a6bb_0  
tbb                       2019.8               hfd86e86_0  
tensorboard               2.1.0                    pypi_0    pypi
tensorflow                2.1.0                    pypi_0    pypi
tensorflow-estimator      2.1.0                    pypi_0    pypi
tensorflow-gpu            2.1.0                    pypi_0    pypi
termcolor                 1.1.0                    pypi_0    pypi
terminado                 0.8.3                    py37_0  
testpath                  0.4.4                      py_0  
tk                        8.6.8                hbc83047_0  
tornado                   6.0.3            py37h7b6447c_0  
tqdm                      4.41.1                     py_0  
traitlets                 4.3.3                    py37_0  
urllib3                   1.25.7                   py37_0  
vtk                       8.1.2                    pypi_0    pypi
wcwidth                   0.1.7                    py37_0  
webencodings              0.5.1                    py37_1  
werkzeug                  0.16.0                   pypi_0    pypi
wheel                     0.33.6                   py37_0  
wrapt                     1.11.2           py37h7b6447c_0  
xz                        5.2.4                h14c3975_4  
yaml                      0.1.7                had09818_2  
zeromq                    4.3.1                he6710b0_3  
zipp                      0.6.0                      py_0  
zlib                      1.2.11               h7b6447c_3  
zstd                      1.3.7                h0b5b093_0

Details about conda and system ( conda info ): 
$ conda info

     active environment : base
    active env location : /home/jimmy/miniconda3
            shell level : 1
       user config file : /home/jimmy/.condarc
 populated config files : 
          conda version : 4.8.1
    conda-build version : not installed
         python version : 3.7.4.final.0
       virtual packages : __glibc=2.27
       base environment : /home/jimmy/miniconda3  (writable)
           channel URLs : https://repo.anaconda.com/pkgs/main/linux-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/linux-64
                          https://repo.anaconda.com/pkgs/r/noarch
          package cache : /home/jimmy/miniconda3/pkgs
                          /home/jimmy/.conda/pkgs
       envs directories : /home/jimmy/miniconda3/envs
                          /home/jimmy/.conda/envs
               platform : linux-64
             user-agent : conda/4.8.1 requests/2.22.0 CPython/3.7.4 Linux/5.0.0-23-generic ubuntu/18.04.3 glibc/2.27
                UID:GID : 1000:1000
             netrc file : None
           offline mode : False
The other click and drag functions and left mouse click on a button worked. When I use vtk 8.1.2 installed from pip, the action works just fine. dipy_horizon is the function I was using, which uses fury(which uses vtk) to open a window of a brain image data. The only thing not working in the window was returning the voxel value when clicked.
@marcelotrevisani
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There is no result on your conda list and conda info
Could you please add those?

@pjsjongsung
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Sorry. I'm new to this thing. I added it in the question!
The vtk and fury is not in the conda list right now because as mentioned in the question, I uninstalled it and reinstalled using pip

@marcelotrevisani
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Do you have a code as an example which reproduce that problem?

@marcelotrevisani
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marcelotrevisani commented Jan 28, 2020 •
edited
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from your conda list you are using vtk from pypi
can you try:

conda create -n vtk-test vtk python --channel conda-forge
conda activate vtk-test

and try to run your piece of code again to see if it is working please

@pjsjongsung
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I think I have to add dipy and fury in the conda vtk-test environment also to test if the code works. Do you know what command I should use?

@pjsjongsung
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I've tried in the environment and the problem still persists.

@Tobias-Fischer
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Is this still an issue @pjsjongsung?

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@Tobias-Fischer @marcelotrevisani @pjsjongsung