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'Segmentation fault: 11' happens when use plk plugin of tempo2 on Mac OS #33

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xuhengdada opened this issue Jul 22, 2024 · 2 comments
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@xuhengdada
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Solution to issue cannot be found in the documentation.

  • I checked the documentation.

Issue

When I use the plk plugin of tempo2, the fitting is finished and followed by the "Segmentation fault: 11", in the interface of pgplot, the residuals are missing, as shown in the figure at the end. I think this may be a problem with pgplot, since this same seg fault happens when using pazi, paz apps in psrchive.
tempo2_failure_20240722-130438

Installed packages

# Name                    Version                   Build  Channel
bzip2                     1.0.8                hfdf4475_7    conda-forge
c-ares                    1.32.2               h51dda26_0    conda-forge
ca-certificates           2024.7.4             h8857fd0_0    conda-forge
cfitsio                   4.4.1                ha105788_0    conda-forge
fftw                      3.3.10          nompi_h292e606_110    conda-forge
gsl                       2.7.1                hdbe807d_1
krb5                      1.21.3               h37d8d59_0    conda-forge
libblas                   3.9.0           22_osx64_openblas    conda-forge
libcurl                   8.8.0                hf9fcc65_1    conda-forge
libcxx                    18.1.8               hef8daea_0    conda-forge
libedit                   3.1.20230828         h6c40b1e_0
libev                     4.33                 h9ed2024_1
libffi                    3.4.2                h0d85af4_5    conda-forge
libgfortran               5.0.0           13_2_0_h97931a8_3    conda-forge
libgfortran5              13.2.0               h2873a65_3    conda-forge
liblapack                 3.9.0           22_osx64_openblas    conda-forge
libnghttp2                1.58.0               h64cf6d3_1    conda-forge
libopenblas               0.3.27          openmp_h8869122_1    conda-forge
libpng                    1.6.43               h92b6c6a_0    conda-forge
libsqlite                 3.46.0               h1b8f9f3_0    conda-forge
libssh2                   1.11.0               hd019ec5_0    conda-forge
libxcb                    1.16                 h0dc2134_0    conda-forge
libzlib                   1.3.1                h87427d6_1    conda-forge
llvm-openmp               18.1.8               h15ab845_0    conda-forge
ncurses                   6.5                  h5846eda_0    conda-forge
openssl                   3.3.1                h87427d6_2    conda-forge
pgplot                    5.2.2             h2d2bcf7_1009    conda-forge
pip                       24.0               pyhd8ed1ab_0    conda-forge
pthread-stubs             0.3                  hdd91f34_1
python                    3.10.14         h00d2728_0_cpython    conda-forge
readline                  8.2                  h9e318b2_1    conda-forge
setuptools                71.0.4             pyhd8ed1ab_0    conda-forge
tempo2                    2024.04.1            h8f272d2_0    conda-forge
tk                        8.6.13               h1abcd95_1    conda-forge
tzdata                    2024a                h0c530f3_0    conda-forge
wheel                     0.43.0             pyhd8ed1ab_1    conda-forge
xorg-kbproto              1.0.7             h35c211d_1002    conda-forge
xorg-libx11               1.8.9                h7022169_1    conda-forge
xorg-libxau               1.0.11               h0dc2134_0    conda-forge
xorg-libxdmcp             1.1.3                h35c211d_0    conda-forge
xorg-xextproto            7.3.0             hb7f2c08_1003    conda-forge
xorg-xproto               7.0.31            h9ed2024_1007
xz                        5.2.6                h775f41a_0    conda-forge
zlib                      1.3.1                h87427d6_1    conda-forge
zstd                      1.5.6                h915ae27_0    conda-forge

Environment info

conda version : 24.3.0
    conda-build version : not installed
         python version : 3.12.2.final.0
                 solver : libmamba (default)
       virtual packages : __archspec=1=m1
                          __conda=24.3.0=0
                          __osx=14.3=0
                          __unix=0=0
  conda av metadata url : None
           channel URLs : https://repo.anaconda.com/pkgs/main/osx-64
                          https://repo.anaconda.com/pkgs/main/noarch
                          https://repo.anaconda.com/pkgs/r/osx-64
                          https://repo.anaconda.com/pkgs/r/noarch
               platform : osx-64
             user-agent : conda/24.3.0 requests/2.31.0 CPython/3.12.2 Darwin/23.3.0 OSX/14.3 solver/libmamba conda-libmamba-solver/24.1.0 libmambapy/1.5.8 aau/0.4.4 c/. s/. e/.
                UID:GID : 501:20
             netrc file : None
           offline mode : False
@xuhengdada xuhengdada added the bug Something isn't working label Jul 22, 2024
@mingzhu2001
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Hello, I was wondering if you have solved this problem, I encountered a similar problem as you

@xuhengdada
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Hi, I didn't solve this problem. I think this problem mainly happens on MacOS. These softwares works fine on other linux platforms. I have no idea what's cause this problem.

Hello, I was wondering if you have solved this problem, I encountered a similar problem as you

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