diff --git a/.azure-pipelines/azure-pipelines-linux.yml b/.azure-pipelines/azure-pipelines-linux.yml index adce9a5..f04e699 100755 --- a/.azure-pipelines/azure-pipelines-linux.yml +++ b/.azure-pipelines/azure-pipelines-linux.yml @@ -5,7 +5,7 @@ jobs: - job: linux pool: - vmImage: ubuntu-16.04 + vmImage: ubuntu-latest strategy: matrix: linux_64_: diff --git a/.scripts/build_steps.sh b/.scripts/build_steps.sh index 522eabc..71a0686 100755 --- a/.scripts/build_steps.sh +++ b/.scripts/build_steps.sh @@ -10,9 +10,10 @@ export FEEDSTOCK_ROOT="${FEEDSTOCK_ROOT:-/home/conda/feedstock_root}" source ${FEEDSTOCK_ROOT}/.scripts/logging_utils.sh -endgroup "Start Docker" +( endgroup "Start Docker" ) 2> /dev/null + +( startgroup "Configuring conda" ) 2> /dev/null -startgroup "Configuring conda" export PYTHONUNBUFFERED=1 export RECIPE_ROOT="${RECIPE_ROOT:-/home/conda/recipe_root}" export CI_SUPPORT="${FEEDSTOCK_ROOT}/.ci_support" @@ -36,34 +37,38 @@ source run_conda_forge_build_setup # make the build number clobber make_build_number "${FEEDSTOCK_ROOT}" "${RECIPE_ROOT}" "${CONFIG_FILE}" -endgroup "Configuring conda" + +( endgroup "Configuring conda" ) 2> /dev/null if [[ "${BUILD_WITH_CONDA_DEBUG:-0}" == 1 ]]; then - startgroup "Running conda debug" if [[ "x${BUILD_OUTPUT_ID:-}" != "x" ]]; then EXTRA_CB_OPTIONS="${EXTRA_CB_OPTIONS:-} --output-id ${BUILD_OUTPUT_ID}" fi conda debug "${RECIPE_ROOT}" -m "${CI_SUPPORT}/${CONFIG}.yaml" \ ${EXTRA_CB_OPTIONS:-} \ --clobber-file "${CI_SUPPORT}/clobber_${CONFIG}.yaml" - endgroup "Running conda debug" + # Drop into an interactive shell /bin/bash else - startgroup "Running conda $BUILD_CMD" conda $BUILD_CMD "${RECIPE_ROOT}" -m "${CI_SUPPORT}/${CONFIG}.yaml" \ --suppress-variables ${EXTRA_CB_OPTIONS:-} \ --clobber-file "${CI_SUPPORT}/clobber_${CONFIG}.yaml" - endgroup "Running conda build" - startgroup "Validating outputs" + ( startgroup "Validating outputs" ) 2> /dev/null + validate_recipe_outputs "${FEEDSTOCK_NAME}" - endgroup "Validating outputs" + + ( endgroup "Validating outputs" ) 2> /dev/null + + ( startgroup "Uploading packages" ) 2> /dev/null if [[ "${UPLOAD_PACKAGES}" != "False" ]]; then - startgroup "Uploading packages" upload_package --validate --feedstock-name="${FEEDSTOCK_NAME}" "${FEEDSTOCK_ROOT}" "${RECIPE_ROOT}" "${CONFIG_FILE}" - endgroup "Uploading packages" fi + + ( endgroup "Uploading packages" ) 2> /dev/null fi +( startgroup "Final checks" ) 2> /dev/null + touch "${FEEDSTOCK_ROOT}/build_artifacts/conda-forge-build-done-${CONFIG}" \ No newline at end of file diff --git a/.scripts/logging_utils.sh b/.scripts/logging_utils.sh index a53ef3f..57bc95c 100644 --- a/.scripts/logging_utils.sh +++ b/.scripts/logging_utils.sh @@ -13,18 +13,23 @@ function startgroup { travis ) echo "$1" echo -en 'travis_fold:start:'"${1// /}"'\\r';; + github_actions ) + echo "::group::$1";; * ) echo "$1";; esac -} +} 2> /dev/null function endgroup { # End a foldable group of log lines # Pass a single argument, quoted + case ${CI:-} in azure ) echo "##[endgroup]";; travis ) echo -en 'travis_fold:end:'"${1// /}"'\\r';; + github_actions ) + echo "::endgroup::";; esac -} +} 2> /dev/null diff --git a/.scripts/run_docker_build.sh b/.scripts/run_docker_build.sh index 16d6c15..244ccd1 100755 --- a/.scripts/run_docker_build.sh +++ b/.scripts/run_docker_build.sh @@ -7,7 +7,7 @@ source .scripts/logging_utils.sh -startgroup "Configure Docker" +( startgroup "Configure Docker" ) 2> /dev/null set -xeo pipefail @@ -52,11 +52,11 @@ if [ -z "${DOCKER_IMAGE}" ]; then echo "WARNING: DOCKER_IMAGE variable not set and shyaml not installed. Trying to parse with coreutils" DOCKER_IMAGE=$(cat .ci_support/${CONFIG}.yaml | grep '^docker_image:$' -A 1 | tail -n 1 | cut -b 3-) if [ "${DOCKER_IMAGE}" = "" ]; then - echo "No docker_image entry found in ${CONFIG}. Falling back to condaforge/linux-anvil-comp7" - DOCKER_IMAGE="condaforge/linux-anvil-comp7" + echo "No docker_image entry found in ${CONFIG}. Falling back to quay.io/condaforge/linux-anvil-comp7" + DOCKER_IMAGE="quay.io/condaforge/linux-anvil-comp7" fi else - DOCKER_IMAGE="$(cat "${FEEDSTOCK_ROOT}/.ci_support/${CONFIG}.yaml" | shyaml get-value docker_image.0 condaforge/linux-anvil-comp7 )" + DOCKER_IMAGE="$(cat "${FEEDSTOCK_ROOT}/.ci_support/${CONFIG}.yaml" | shyaml get-value docker_image.0 quay.io/condaforge/linux-anvil-comp7 )" fi fi @@ -69,9 +69,11 @@ DOCKER_RUN_ARGS="${CONDA_FORGE_DOCKER_RUN_ARGS}" if [ -z "${CI}" ]; then DOCKER_RUN_ARGS="-it ${DOCKER_RUN_ARGS}" fi -endgroup "Configure Docker" -startgroup "Start Docker" +( endgroup "Configure Docker" ) 2> /dev/null + +( startgroup "Start Docker" ) 2> /dev/null + export UPLOAD_PACKAGES="${UPLOAD_PACKAGES:-True}" docker run ${DOCKER_RUN_ARGS} \ -v "${RECIPE_ROOT}":/home/conda/recipe_root:rw,z,delegated \ @@ -94,4 +96,7 @@ docker run ${DOCKER_RUN_ARGS} \ /home/conda/feedstock_root/${PROVIDER_DIR}/build_steps.sh # verify that the end of the script was reached -test -f "$DONE_CANARY" \ No newline at end of file +test -f "$DONE_CANARY" + +# This closes the last group opened in `build_steps.sh` +( endgroup "Final checks" ) 2> /dev/null \ No newline at end of file diff --git a/README.md b/README.md index 0e9e64a..8678fb4 100644 --- a/README.md +++ b/README.md @@ -40,6 +40,7 @@ Installing `pyglotaran` from the `conda-forge` channel can be achieved by adding ``` conda config --add channels conda-forge +conda config --set channel_priority strict ``` Once the `conda-forge` channel has been enabled, `pyglotaran` can be installed with: diff --git a/build-locally.py b/build-locally.py index 3453cfe..00eeb34 100755 --- a/build-locally.py +++ b/build-locally.py @@ -7,6 +7,7 @@ import glob import subprocess from argparse import ArgumentParser +import platform def setup_environment(ns): @@ -16,6 +17,10 @@ def setup_environment(ns): os.environ["BUILD_WITH_CONDA_DEBUG"] = "1" if ns.output_id: os.environ["BUILD_OUTPUT_ID"] = ns.output_id + if "MINIFORGE_HOME" not in os.environ: + os.environ["MINIFORGE_HOME"] = os.path.join( + os.path.dirname(__file__), "miniforge3" + ) def run_docker_build(ns): @@ -23,6 +28,11 @@ def run_docker_build(ns): subprocess.check_call([script]) +def run_osx_build(ns): + script = ".scripts/run_osx_build.sh" + subprocess.check_call([script]) + + def verify_config(ns): valid_configs = { os.path.basename(f)[:-5] for f in glob.glob(".ci_support/*.yaml") @@ -46,10 +56,16 @@ def verify_config(ns): else: raise ValueError("config " + ns.config + " is not valid") # Remove the following, as implemented - if not ns.config.startswith("linux"): + if ns.config.startswith("win"): raise ValueError( - f"only Linux configs currently supported, got {ns.config}" + f"only Linux/macOS configs currently supported, got {ns.config}" ) + elif ns.config.startswith("osx") and platform.system() == "Darwin": + if "OSX_SDK_DIR" not in os.environ: + raise RuntimeError( + "Need OSX_SDK_DIR env variable set. Run 'export OSX_SDK_DIR=/opt'" + "to download the SDK automatically to '/opt/MacOSX.sdk'" + ) def main(args=None): @@ -68,7 +84,12 @@ def main(args=None): verify_config(ns) setup_environment(ns) - run_docker_build(ns) + if ns.config.startswith("linux") or ( + ns.config.startswith("osx") and platform.system() == "Linux" + ): + run_docker_build(ns) + elif ns.config.startswith("osx"): + run_osx_build(ns) if __name__ == "__main__": diff --git a/recipe/meta.yaml b/recipe/meta.yaml index 1d76adf..1e6290d 100644 --- a/recipe/meta.yaml +++ b/recipe/meta.yaml @@ -1,5 +1,5 @@ {% set name = "pyglotaran" %} -{% set version = "0.3.3" %} +{% set version = "0.4.0" %} {% set download_name = "pyglotaran" %} package: @@ -8,7 +8,7 @@ package: source: url: https://pypi.io/packages/source/{{ download_name[0] }}/{{ download_name }}/{{ download_name }}-{{ version }}.tar.gz - sha256: 212c5f6dce56282f489af8d205a7e65cfbb2881e859f6cbb37f69a02f795eeb5 + sha256: ed7066a6b98e1835a1291362a63d86d64f3578a5ef8a57ddf4949f45d671bffd build: number: 0 @@ -33,6 +33,7 @@ requirements: - scipy >=1.3.2 - sdtfile >=2020.8.3 - setuptools >=41.2 + - tabulate >=0.8.8 - xarray >=0.16.2 test: @@ -45,6 +46,7 @@ test: - pytest -k "not IrfDispersion" glotaran requires: - pytest + - ipython about: home: https://github.com/glotaran/pyglotaran