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4 coherence masking #9

Merged
merged 3 commits into from
Aug 4, 2023
Merged

4 coherence masking #9

merged 3 commits into from
Aug 4, 2023

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JackDMcGrath
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@JackDMcGrath JackDMcGrath linked an issue Aug 4, 2023 that may be closed by this pull request
@JackDMcGrath JackDMcGrath merged commit a03736f into dev Aug 4, 2023
@JackDMcGrath JackDMcGrath deleted the 4-coherence-masking branch August 4, 2023 13:09
espiritocz added a commit that referenced this pull request Sep 6, 2023
* 1 reload patches (#6)

* Add option to restart processing

* Update .gitignore

* Add some testing print statements

* Add xarray

* Allow storing and loading of patches

* 3 aggressive nullification (#7)

* Add reset nulls script

* Add aggressive nullifying, nullmask and null both

* Add remove noloops script

* Add backup unnulled data option

* 2 add in polymask option (#8)

* Add def polymask

* Add polyclipping, using inverted polymask

* 4 coherence masking (#9)

* Add option to plot coherence

* Update with qi's networks, and log scales ofr coherence

* And poly mask and coherence masking

* supervised autocorrection

correcting some of typos etc.

* trying fix permissions from windows

* Allow polyclips and range_str to be used

* Add print statement in case no patches are found

* 12 clip05 bugs (#13)

* Add check for -r, -g or -p

* Add rangestr for polyclip

* Set coherence to 0 rather than NaN

* Invert bool mask

* Always use a bool mask

* 12 clip05 bugs (#14)

* Add check for -r, -g or -p

* Add rangestr for polyclip

* Set coherence to 0 rather than NaN

* Invert bool mask

* Always use a bool mask

* Drop try/finally statements when clipping

* Update LiCSBAS13_sb_inv.py

fixed bug (cumfile definition)

* bug fix LiCSBAS01

* regular update

* Unwrapping correction

* cum2vel_weighted

* 130_sb_inv to allow for user defined ifg list
133 to recalculate stats and make final cum.h5

* make a cum from epoch data

* densify network from a given ifg list by adding a target number of new ifgs

* choose reference from 4 proxies

* remove reference effect

* graph theory and some io changes

* added functional LiCSBAS02to05

* regular update

* updated permissions

* updated reqs (networkx)

* Update environment.yml

* added snaphu to binder

* set OMP_NUM_THREADS to 1

* Update LiCSBAS12_loop_closure.py

* Update environment.yml

removed faulty pip install of licsar_extra... keep it manually then

* Update LiCSBAS_meta.py

bug fix

* Update postBuild

tutorial: prepare also preprocessed data (TS folder)

* Update postBuild

* Update postBuild

* Update licsbas_tutorial.ipynb

minor edit

* Update licsbas_tutorial.ipynb

---------

Co-authored-by: JackDMcGrath <[email protected]>
Co-authored-by: laz048 <[email protected]>
Co-authored-by: Lin Shen
Co-authored-by: qi-ou <[email protected]>
Co-authored-by: qi-ou <[email protected]>
espiritocz added a commit that referenced this pull request Sep 19, 2023
* 1 reload patches (#6)

* Add option to restart processing

* Update .gitignore

* Add some testing print statements

* Add xarray

* Allow storing and loading of patches

* 3 aggressive nullification (#7)

* Add reset nulls script

* Add aggressive nullifying, nullmask and null both

* Add remove noloops script

* Add backup unnulled data option

* 2 add in polymask option (#8)

* Add def polymask

* Add polyclipping, using inverted polymask

* 4 coherence masking (#9)

* Add option to plot coherence

* Update with qi's networks, and log scales ofr coherence

* And poly mask and coherence masking

* supervised autocorrection

correcting some of typos etc.

* trying fix permissions from windows

* Allow polyclips and range_str to be used

* Add print statement in case no patches are found

* 12 clip05 bugs (#13)

* Add check for -r, -g or -p

* Add rangestr for polyclip

* Set coherence to 0 rather than NaN

* Invert bool mask

* Always use a bool mask

* 12 clip05 bugs (#14)

* Add check for -r, -g or -p

* Add rangestr for polyclip

* Set coherence to 0 rather than NaN

* Invert bool mask

* Always use a bool mask

* Drop try/finally statements when clipping

* Update LiCSBAS13_sb_inv.py

fixed bug (cumfile definition)

* bug fix LiCSBAS01

* regular update

* Unwrapping correction

* cum2vel_weighted

* 130_sb_inv to allow for user defined ifg list
133 to recalculate stats and make final cum.h5

* make a cum from epoch data

* densify network from a given ifg list by adding a target number of new ifgs

* choose reference from 4 proxies

* remove reference effect

* graph theory and some io changes

* added functional LiCSBAS02to05

* regular update

* updated permissions

* updated reqs (networkx)

* Update environment.yml

* added snaphu to binder

* set OMP_NUM_THREADS to 1

* Update LiCSBAS12_loop_closure.py

* Update environment.yml

removed faulty pip install of licsar_extra... keep it manually then




for some reason, this contains previously merged commits. 

* Update LiCSBAS_meta.py

bug fix

* Update postBuild

tutorial: prepare also preprocessed data (TS folder)

* Update postBuild

* Update postBuild

* Update licsbas_tutorial.ipynb

minor edit

* Update licsbas_tutorial.ipynb

* regular update

---------

Co-authored-by: JackDMcGrath <[email protected]>
Co-authored-by: laz048 <[email protected]>
Co-authored-by: qi-ou <[email protected]>
Co-authored-by: qi-ou <[email protected]>
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Coherence masking
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