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README.Rmd
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---
output:
md_document:
variant: gfm
html_preview: false
---
```{r echo=FALSE, results="hide", message=FALSE}
library("badger")
library("ypages")
```
# clusterProfiler
<img src="https://raw.githubusercontent.com/Bioconductor/BiocStickers/master/clusterProfiler/clusterProfiler.png" height="200" align="right" />
[](http://www.repostatus.org/#active)
`r badge_bioc_release("clusterProfiler", "green")`
`r badge_devel("guangchuangyu/clusterProfiler", "green")`
[](https://www.bioconductor.org/packages/devel/bioc/html/clusterProfiler.html#since)
[](https://www.bioconductor.org/packages/devel/bioc/html/clusterProfiler.html#archives)
[](https://bioconductor.org/checkResults/devel/bioc-LATEST/clusterProfiler/)
[](https://travis-ci.org/GuangchuangYu/clusterProfiler)
[](https://ci.appveyor.com/project/GuangchuangYu/clusterProfiler)
[](https://codecov.io/gh/GuangchuangYu/clusterProfiler/)
[)`-green.svg)](https://github.com/GuangchuangYu/clusterProfiler/commits/master)
This package implements methods to analyze and visualize functional profiles of genomic coordinates (supported by [ChIPseeker](http://www.bioconductor.org/packages/ChIPseeker)), gene and gene clusters.
For details, please visit our project website, <https://guangchuangyu.github.io/software/clusterProfiler>.
+ [Documentation](https://guangchuangyu.github.io/software/clusterProfiler/documentation/)
+ [Featured Articles](https://guangchuangyu.github.io/software/clusterProfiler/featuredArticles/)
+ [Feedback](https://guangchuangyu.github.io/software/clusterProfiler/#feedback)
[](https://twitter.com/intent/tweet?hashtags=clusterProfiler&url=http://online.liebertpub.com/doi/abs/10.1089/omi.2011.0118&screen_name=guangchuangyu)
[](https://saythanks.io/to/GuangchuangYu)
`r badger::badge_custom("follow me on", "微信", "green", "https://guangchuangyu.github.io/blog_images/biobabble.jpg")`
`r badger::badge_custom("打赏", "支付宝/微信", "green", "https://guangchuangyu.github.io/blog_images/pay_qrcode.png")`
------------------------------------------------------------------------
Please cite the following article when using `clusterProfiler`:
__*Yu G*__, Wang L, Han Y and He Q^\*^. clusterProfiler: an R package for comparing biological themes among gene clusters. OMICS: A Journal of Integrative Biology. 2012, 16(5):284-287.
`r badge_doi("10.1089/omi.2011.0118", "green")`
`r badge_altmetric("681089", "green")`
------------------------------------------------------------------------
### Citation
`r badge_custom("1st most cited paper", "in OMICS", "green",
"http://online.liebertpub.com/action/showMostCitedArticles?journalCode=omi")`
`r badge_custom("ESI", "Highly Cited Paper", "green")`
<img src="https://guangchuangyu.github.io/software/clusterProfiler/featured-articles/index_files/figure-html/citation-1.png" width="890"/>
### Download stats
`r badge_download_bioc("clusterProfiler")`
`r badge_bioc_download("clusterProfiler", "total", "blue")`
`r badge_bioc_download("clusterProfiler", "month", "blue")`
<img src="https://guangchuangyu.github.io/software/clusterProfiler/index_files/figure-html/unnamed-chunk-2-1.png" width="890"/>