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Supporting Information for “Construction, Deployment, and Usage of the Human Reference Atlas Knowledge Graph for Linked Open Data”

Andreas Bueckle1*, Bruce W. Herr II1*, Josef Hardi2, Ellen M Quardokus1, Mark Musen2, Katy Börner1*

1 Department of Intelligent Systems Engineering, Luddy School of Informatics, Computing, and Engineering, Indiana University, Bloomington, IN, USA
2 Stanford Center for Biomedical Informatics Research, Stanford University, Stanford, California, USA

* Corresponding authors

Here, we collect materials for the companion website at https://cns-iu.github.io/hra-kg-supporting-information/ as well as a Jupyter Notebook demonstrating how to access the HRA KG. Please refer to the companion website for the supporting information in this repository.

GitHub Repositories Used for HRA KG Construction

Name Description URL
hra-kg Human Reference Atlas Knowledge Graph https://github.com/hubmapconsortium/hra-kg
hra-do-processor HRA Digital Objects Processor https://github.com/hubmapconsortium/hra-do-processor
hra-ubkg-exporter A CLI for exporting a subset of the HRA KG to Unified Biomedical Knowledge Graph (UBKG) format https://github.com/x-atlas-consortia/hra-ubkg-exporter