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Cannot parse job file #67

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cbaakman opened this issue Mar 9, 2017 · 1 comment
Open

Cannot parse job file #67

cbaakman opened this issue Mar 9, 2017 · 1 comment
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cbaakman commented Mar 9, 2017

Found this warning in the log file. Seeing as MRS makes its own job files, this should be valid.

2017-03-09 09:24:27 [WARN] : Cannot parse job file /srv/mrs-data/blast-cache/74dbae2c-1b9f-4239-8e8d-114abd59ecf4.job: Document (line: 1) not well-formed: Error parsing XML, expected 'tag' but found 'end of file' ('
@cbaakman cbaakman self-assigned this Mar 9, 2017
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cbaakman commented May 23, 2017 •
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/srv/mrs-data/blast-cache/74dbae2c-1b9f-4239-8e8d-114abd59ecf4.job is no longer present in the docker container, but it was probably an empty file. Empty files have occurred more often in the past. That's why we've built a try-catch construction around the parse method.

Cause of existence of those empty files is unknown. Possibly an interrupt during writing.

@cbaakman cbaakman reopened this Nov 6, 2017
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