build.xml

<?xml version="1.0" ?>

<project name="sbol" default="plugin" basedir=".">
    <property file="plugin.properties"/>
    <property name="build" location="build"/>
    <property name="classes" location="classes"/>
    <property name="src" location="src"/>
    <property name="plugin.src" location="plugin/src"/>
    <property name="versioning.src" location="versioning/src"/>
    <property name="servlet.src" location="servlet/src"/>
	
	<property name="main.class" value="com.clarkparsia.sbol.editor.SBOLDesigner"/>
	<property name="output.file" location="${build}/${short-plugin-name}-${plugin-version}"/>
	
    <path id="classpath">
        <fileset dir="../GeneiousFiles/lib">
            <include name="GeneiousPublicAPI.jar"/>
            <include name="jdom.jar"/>
            <include name="jebl.jar"/>
            <include name="guava-r09.jar"/>
        </fileset>
        <fileset dir="lib">
            <include name="*.jar"/>
        </fileset>
        <fileset dir="versioning/lib">
            <include name="*.jar"/>
        </fileset>
    </path>

    <path id="classpath-designer">
        <fileset dir="../GeneiousFiles/lib">
            <include name="guava-r09.jar"/>
        </fileset>
        <fileset dir="lib">
            <include name="*.jar"/>
        </fileset>
    </path>

    <path id="classpath-servlet">
        <path refid="classpath-designer"/>
        <fileset dir="servlet/lib">
            <include name="*.jar"/>
        </fileset>
    </path>

    <target name= "plugin" depends="compile-plugin" description="Builds the Geneious plugin">
        <jar jarfile="${output.file}.gplugin">
            <fileset dir="${classes}"/>
            <fileset dir="">
                <include name="plugin.properties"/>
            </fileset>
            <fileset dir="src">
                <include name="**/*.owl"/>
            	<include name="**/*.rdf"/>
            	<include name="**/*.png"/>
            	<include name="**/*.gif"/>
            </fileset>
        	<zipgroupfileset dir="lib" includes="*.jar"/>
        </jar>
        <echo message="Created ${output.file}.gplugin"/>
    </target>
	
    <target name="designer" depends="compile-designer" description="Builds the standalone SBOL designer">
        <jar jarfile="${output.file}.jar">
			<manifest>
				<attribute name="Main-Class" value="${main.class}"/>
			</manifest>
        	<fileset dir="${classes}"/>
            <fileset dir="">
                <include name="plugin.properties"/>
                <include name="${src}/logging.properties"/>
            </fileset>
            <fileset dir="src">
                <include name="**/*.owl"/>
            	<include name="**/*.rdf"/>
            	<include name="**/*.png"/>
            	<include name="**/*.gif"/>
            </fileset>
        	<zipgroupfileset dir="lib" includes="*.jar"/>
            <zipgroupfileset dir="../GeneiousFiles/lib" includes="guava-r09.jar"/>
        </jar>
    </target>
	
    <target name="servlet" depends="compile-servlet" description="Builds the SBOL visual servlet">
	    <war destfile="${output.file}.war" webxml="servlet/WEB-INF/web.xml">
        	<classes dir="${classes}"/>
            <classes dir="">
                <include name="plugin.properties"/>
                <include name="${src}/logging.properties"/>
            </classes>
            <classes dir="src">
                <include name="**/*.owl"/>
            	<include name="**/*.rdf"/>
            	<include name="**/*.png"/>
            	<include name="**/*.gif"/>
            </classes>

	        	<lib dir="lib" includes="*.jar"/>
	            <lib dir="../GeneiousFiles/lib" includes="guava-r09.jar"/>
	    </war>
    </target>
	
    <target name="compile-plugin" depends="prepare">
        <javac destdir="${classes}" debug="true" target="1.5">
            <classpath refid="classpath"/>
            <src path="${src}"/>
        	<src path="${plugin.src}"/>
        	<src path="${versioning.src}"/>
        </javac>
    </target>

    <target name="compile-designer" depends="prepare">
        <javac destdir="${classes}" debug="true" target="1.5">
            <classpath refid="classpath-designer"/>
            <src path="${src}"/>
        	<src path="${versioning.src}"/>
        </javac>
    </target>

    <target name="compile-servlet" depends="compile-designer">
        <javac destdir="${classes}" debug="true" target="1.5">
            <classpath refid="classpath-servlet"/>
        	<src path="${servlet.src}"/>
        </javac>
    </target>

    <target name="prepare">
        <mkdir dir="${build}"/>
        <mkdir dir="${classes}"/>
    </target>

    <target name="clean">
        <delete dir="${build}"/>
        <delete dir="${classes.base}"/>
    </target>

</project>