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On modern systems, /tmp redirects to RAM.
On a 1tb RAM node, the 500gb of RAM in /tmp is easily exhausted during the diamond run if multiple instances are running with hundreds/thousands of MAGs each.
The solution is to allow the user to specify temporary directory. If this is already possible, I don't see a flag for it.
Results are sometimes silently corrupt if the diamond blast file is truncated once /tmp is exhausted.
The text was updated successfully, but these errors were encountered:
On modern systems, /tmp redirects to RAM.
On a 1tb RAM node, the 500gb of RAM in /tmp is easily exhausted during the diamond run if multiple instances are running with hundreds/thousands of MAGs each.
The solution is to allow the user to specify temporary directory. If this is already possible, I don't see a flag for it.
Results are sometimes silently corrupt if the diamond blast file is truncated once /tmp is exhausted.
The text was updated successfully, but these errors were encountered: