From bc459328a6dc1ae98d83f5e91d9228ea67c73f6e Mon Sep 17 00:00:00 2001
From: Alex Chklovski <54562698+chklovski@users.noreply.github.com>
Date: Tue, 3 Oct 2023 14:53:32 +1000
Subject: [PATCH] Update README.md

---
 README.md | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/README.md b/README.md
index fbc315e..858ce7c 100644
--- a/README.md
+++ b/README.md
@@ -112,3 +112,10 @@ Testrun runs CheckM2's genome quality prediction models on three (complete, unco
 |TEST1 | d__Bacteria;p__Proteobacteria;c__Gammaproteobacteria;o__Enterobacterales;f__Enterobacteriaceae;g__Escherichia;s__Escherichia coli |100| 0.74| 99.97| 0.04|
 |TEST2 | d__Bacteria;p__Patescibacteria;c__Dojkabacteria;o__SC72;f__SC72;g__UBA5209;s__UBA5209 sp002840365 | 98.54 | 0.21|79.86| 0.00|
 |TEST3 | d__Archaea;p__Nanohaloarchaeota;c__Nanosalinia;o__Nanosalinales;f__Nanosalinaceae;g__Nanohalobium;s__Nanohalobium sp001761425 | 98.75 |0.51| 87.77 |0.00| 
+
+# Databases
+
+CheckM2 will automatically download and install the reference database. However, if for some reason you are unable to to do so through CheckM2 but still wish to run CheckM2, you can download it from zenodo from the URL below and use it with CheckM2 using the `--database_path /path/to/downloaded_db/uniref100.KO.1.dmnd` argument or export it to the CHECKM2DB environmental variable: 
+
+Current reference database (v.1.0.2):
+https://zenodo.org/record/5571251/