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Seurat clustering method, graph based SLM #1

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chenweng1991 opened this issue Nov 27, 2018 · 0 comments

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chenweng1991 commented Nov 27, 2018

It is essential to not forget what is the algorithm of clustering in Seurat.
Basically, it is a graph-based community detection method SLM(smart local moving). There are other SLM packages out there, eg. https://github.com/chen198328/slm and https://github.com/deepminder/SLM4J

There are also other community detection algorithm, such as this https://github.com/CWTSLeiden/networkanalysis, which as claimed better then SLM.

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