diff --git a/prolif/fingerprint.py b/prolif/fingerprint.py index de24b2c..5c5f79d 100644 --- a/prolif/fingerprint.py +++ b/prolif/fingerprint.py @@ -730,7 +730,9 @@ def _run_bridged_analysis(self, traj, lig, prot, water, **kwargs): kwargs.pop("n_jobs", None) residues = kwargs.pop("residues", None) fp = Fingerprint( - interactions=["HBDonor", "HBAcceptor"], parameters=self.parameters + interactions=["HBDonor", "HBAcceptor"], + parameters=self.parameters, + count=self.count, ) # run analysis twice, once on ligand-water, then on water-prot