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Changes to deep zoom scale bar for Visium CytAssist Spatial Gene Expression, 11mm #1146

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brianraymor opened this issue Nov 15, 2024 · 0 comments

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@brianraymor
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brianraymor commented Nov 15, 2024

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From cell-sci-applications:

@kaloster wrote:

Hey Brian, the 11mm assay does affect calculations for the deep zoom scale bar in Explorer - we’re currently basing the calculation on a default 8mm slide for Visium.
This means that we would have to add a field to identify the assay type in CXG’s uns[“spatial”] object as part of the conversion script, and in turn add the relevant conditions for calculation on the Explorer side of things. I can start working on that later on today

Calculate scale bar by setting slide size based on assay_ontology_term_id available from the dataset metadata

@kaloster kaloster changed the title [Placeholder] Changes to deep zoom scale bar for Visium CytAssist Spatial Gene Expression, 11mm Changes to deep zoom scale bar for Visium CytAssist Spatial Gene Expression, 11mm Feb 12, 2025
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