From f994c72024c230ff34c52fcb7b0e82aa6d1e1ced Mon Sep 17 00:00:00 2001
From: Anthony Christidis <anthony.christidis@stat.ubc.ca>
Date: Wed, 18 Sep 2024 22:55:03 -0400
Subject: [PATCH] Add new SIR function to references in pkgdown website.

---
 _pkgdown.yml | 22 ++++++++++++----------
 1 file changed, 12 insertions(+), 10 deletions(-)

diff --git a/_pkgdown.yml b/_pkgdown.yml
index 53ce521..fdd86b1 100644
--- a/_pkgdown.yml
+++ b/_pkgdown.yml
@@ -41,12 +41,13 @@ reference:
     contents:
       - boxplotPCA
       - calculateDiscriminantSpace
+      - calculateSIRSpace
       - plotCellTypeMDS
       - plotCellTypePCA
   - title: Visualization of Marker Expressions
     contents:
-      - plotGeneExpressionDimred 
-      - plotMarkerExpression 
+      - plotGeneExpressionDimred
+      - plotMarkerExpression
   - title: Visualization of QC and Annotation Scores
     contents:
       - histQCvsAnnotation
@@ -58,7 +59,7 @@ reference:
       - comparePCA
       - comparePCASubspace
       - plotPairwiseDistancesDensity
-      - plotWassersteinDistance 
+      - plotWassersteinDistance
   - title: Evaluation of Marker Gene Alignment
     contents:
       - calculateHVGOverlap
@@ -67,24 +68,25 @@ reference:
     contents:
       - calculateCramerPValue
       - calculateHotellingPValue
-      - calculateNearestNeighborProbabilities 
+      - calculateNearestNeighborProbabilities
       - calculateAveragePairwiseCorrelation
-      - regressPC 
+      - regressPC
   - title: Anomaly Detection (Global and Cell Type-Specific)
     contents:
       - detectAnomaly
-      - calculateCellSimilarityPCA 
+      - calculateCellSimilarityPCA
   - title: Calculation of Distances Between Specific Cells and Cell Populations
     contents:
-      - calculateCellDistances 
-      - calculateCellDistancesSimilarity 
+      - calculateCellDistances
+      - calculateCellDistancesSimilarity
   - title: Misc
     contents:
-      - projectPCA 
+      - projectPCA
+      - projectSIR
       - calculateCategorizationEntropy
   - title: Datasets
     contents:
-      - reference_data 
+      - reference_data
       - query_data
       - qc_data