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0.4.1 update issues #168

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deepayan opened this issue Feb 14, 2024 · 0 comments
Open

0.4.1 update issues #168

deepayan opened this issue Feb 14, 2024 · 0 comments
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@deepayan
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I have updated

https://ccb-hms.github.io/phonto/vignettes/diagnostics-basics.html

running 0.4.1. It's mostly looking good. Only three anomalies:

> str(nhanes("OCQ_I"))
Error in .checkTableNames(nh_table) : 
  Table(s) OCQ_I missing from database
> nhanesOptions(use.db = FALSE)
> str(nhanes("OCQ_I"))
'data.frame':   6327 obs. of  14 variables:
 $ SEQN   : num  83732 83733 83734 83735 83736 ...
 $ OCD150 : Factor w/ 6 levels "Working at a job or business,",..: 1 4 4 2 1 4 1 4 4 4 ...
 $ OCQ180 : num  60 NA NA NA 32 NA 40 NA NA NA ...
 $ OCQ210 : Factor w/ 4 levels "Yes","No","Refused",..: NA NA NA 1 1 NA NA NA NA NA ...
 $ OCQ260 : Factor w/ 8 levels "An employee of a private company, business, or individual for wages, salary, or commission.",..: 3 NA NA 3 5 NA 1 NA NA NA ...
 $ OCD270 : num  252 NA NA 72 12 NA 5 NA NA NA ...
 $ OCQ600 : Factor w/ 8 levels "Always","Usually",..: 5 NA NA 4 5 NA 5 NA NA NA ...
 $ OCQ610 : num  0 NA NA 15 0 NA 0 NA NA NA ...
 $ OCQ630 : num  NA NA NA 1 NA NA NA NA NA NA ...
 $ OCQ640 : num  0 NA NA 0 0 NA 0 NA NA NA ...
 $ OCQ660 : num  NA NA NA NA NA NA NA NA NA NA ...
 $ OCQ380 : Factor w/ 9 levels "Taking care of house or family",..: NA 7 3 NA NA 1 NA 1 2 6 ...
 $ OCD390G: Factor w/ 6 levels "Enter occupation",..: 2 1 1 1 2 1 1 1 4 1 ...
 $ OCD395 : num  NA 252 192 360 NA 120 6 48 NA 36 ...

This one needs a closer look.

@sam-pullman sam-pullman added this to the v0.5.0 milestone Feb 23, 2024
@sam-pullman sam-pullman self-assigned this Feb 23, 2024
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