- (v. 1.1.9) Manage duckdb connections more completely; all registered connections are disconnected (invalidated) whenever a new table is created.
- (v. 1.1.7) Add 'Benchmarking with ProteinGym' vignette to benchmark AlphaMissense predictions. mtmorgan#8. Thank you @tram-nguyen-n
- (v. 1.1.6) Add
gosling_plot()
for visualizing variants as bar or lollipop plots. Merges mtmorgan#6 Thanks @lee-t. - (v. 1.1.4) Add
clinvar_data()
andclinvar_plot()
for visualizing ClinVar data. Merges mtmorgan#4 Thanks @tram-nguyen-n - (v. 1.1.2)
af_predictions()
returns a tibble with 21 columns, instead of 20. Merges mtmorgan#3.
- (v. 0.99.21) Update Zenodo data source to record 10813168, with more accessible 'CC-BY-4.0' license.
- (v. 0.99.16) Housekeeping
- Order vignettes introduction, visualization, issues.
- Use rjsoncons (>= 1.0.1), so that jsonlite is not a hard dependency.
- Acknowledge additional funding sources; add ImmunoOncology biocViews term.
- (v. 0.99.15) Respond to Bioconductor reviewer comments
- Use BiocBaseUtils for input assertions.
- Include range join SQL directly rather than via a non-exported function.
- Report file size when downloading.
- Improve test coverage.
- See GitHub issue comment; thanks @LiNk-NY
- (v. 0.99.11) Use an S4 class for
alphamissense_connection
, extendingduckdb_connection
. - (v. 0.99.10) Introduce visualization on AlphaFold predictions.
- (v. 0.99.9) Update maintainer email address, add 'Resource unavailable' section to 'Issues & Solutions' vignette.
- (v. 0.99.7) Update to revised Zenodo API.
- (v. 0.99.5) BREAKING change. Requires duckdb >= 0.9.1, which cannot read DuckDB databases created with earlier versions. Also introduces changes to local cache naming. See the 'Issues & Solutions' vignette.
- (v. 0.99.4) Change back to Bioconductor 'Software' package, to allow for regular testing of data access code.
- (v. 0.99.1) Change to Bioconductor 'Annotation' package.
- (v. 0.99.1) Update to change in Zenodo API.
- (v. 0.0.18) Rename (including updating existing tables) '#CHROM' to 'CHROM' in hg19 / hg38 tables
- (v. 0.0.17) Initial Bioconductor submission.