links.md

[best-practices]: http://journals.plos.org/plosbiology/article?id=10.1371/journal.pbio.1001745
[cc-by-human]: https://creativecommons.org/licenses/by/4.0/
[cc-by-legal]: https://creativecommons.org/licenses/by/4.0/legalcode
[ci]: http://communityin.org/
[coc-reporting]: https://docs.carpentries.org/topic_folders/policies/incident-reporting.html
[coc]: https://docs.carpentries.org/topic_folders/policies/code-of-conduct.html
[coderefinery-lessons]: https://coderefinery.org/lessons/
[code-review]: https://en.wikipedia.org/wiki/Code_review
[concept-maps]: https://carpentries.github.io/instructor-training/05-memory/
[contrib-covenant]: https://contributor-covenant.org/
[cran-checkpoint]: https://cran.r-project.org/package=checkpoint
[cran-knitr]: https://cran.r-project.org/package=knitr
[cran-stringr]: https://cran.r-project.org/package=stringr
[dc-lessons]: http://www.datacarpentry.org/lessons/
[email]: mailto:team@carpentries.org
[functional-programming]: https://en.wikipedia.org/wiki/Functional_programming
[gdpr]: https://ec.europa.eu/info/law/law-topic/data-protection/eu-data-protection-rules_en
[github-importer]: https://import2.github.com/
[github-markdown]: https://guides.github.com/features/mastering-markdown/
[github-actions]: https://docs.github.com/en/actions
[good-practices]: http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1005510
[importer]: https://github.com/new/import
[jekyll-collection]: https://jekyllrb.com/docs/collections/
[jekyll-install]: https://jekyllrb.com/docs/installation/
[jekyll-windows]: http://jekyll-windows.juthilo.com/
[jekyll]: https://jekyllrb.com/
[jupyter]: https://jupyter.org/
[kramdown]: https://kramdown.gettalong.org/
[lc-lessons]: https://librarycarpentry.org/lessons/
[lesson-example]: https://carpentries.github.io/lesson-example/
[mit-license]: https://opensource.org/licenses/mit-license.html
[morea]: https://morea-framework.github.io/
[numfocus]: https://numfocus.org/
[numpy]: http://www.numpy.org/
[osi]: https://opensource.org
[pandas]: https://pandas.pydata.org/
[pandoc]: https://pandoc.org/
[paper-now]: https://github.com/PeerJ/paper-now
[pull-request]: https://docs.github.com/en/pull-requests/collaborating-with-pull-requests/proposing-changes-to-your-work-with-pull-requests/about-pull-requests
[python-documentation]: https://docs.python.org/3/
[python-gapminder]: https://swcarpentry.github.io/python-novice-gapminder/
[pyyaml]: https://pypi.org/project/PyYAML/
[r-markdown]: https://rmarkdown.rstudio.com/
[rstudio]: https://www.rstudio.com/
[ruby-install-guide]: https://www.ruby-lang.org/en/downloads/
[ruby-installer]: https://rubyinstaller.org/
[rubygems]: https://rubygems.org/pages/download/
[scikit-learn]: https://github.com/scikit-learn/scikit-learn
[ssi]: https://software.ac.uk/
[ssi-choosing-name]: https://software.ac.uk/resources/guides/choosing-project-and-product-names
[styles]: https://github.com/carpentries/styles/
[swc-lessons]: https://software-carpentry.org/lessons/
[swc-programming-with-python]: https://swcarpentry.github.io/python-novice-inflammation/
[swc-releases]: https://github.com/swcarpentry/swc-releases
[training]: https://carpentries.github.io/instructor-training/
[yaml]: http://yaml.org/
[ssi-fair-lesson]: https://github.com/carpentries-incubator/fair-research-software