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Trying to use seurat-data leads to build faliure. #7

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csmagnano opened this issue Apr 18, 2024 · 0 comments
Open

Trying to use seurat-data leads to build faliure. #7

csmagnano opened this issue Apr 18, 2024 · 0 comments

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@csmagnano
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Currently, adding the SeuratData package, as done in the large data lesson, causes a build failure due to not being able to find the package. Seurat-data is not available on CRAN or Bioconductor, and is only available to install from Github.

Right now I just set eval=FALSE on the 3 blocks which use SeuratData.

I've tried solutions such as those suggested as a workbench workaround for Github packages as seen here as well as instead pointing the package to a copy that uses the expected naming convention, but I couldn't get it to build. It's possible there's a combination of these solutions or other small changes I missed which works.

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