From e5b06f671206f2223cd3d888a19dff1f10dc4c6e Mon Sep 17 00:00:00 2001 From: GitHub Actions Date: Mon, 30 Sep 2024 14:48:01 +0000 Subject: [PATCH] site deploy Auto-generated via {sandpaper} Source : 801d3cfacc78b31f9a7ae0957af5841e841f5dda Branch : md-outputs Author : GitHub Actions Time : 2024-09-30 14:47:02 +0000 Message : markdown source builds Auto-generated via {sandpaper} Source : 97900c7a2d1b3e3faaf31e90b106078a8ac8d4c8 Branch : main Author : Andrew Ghazi <6763470+andrewGhazi@users.noreply.github.com> Time : 2024-09-30 14:15:20 +0000 Message : Merge pull request #44 from ccb-hms/cta_refresh answer end exercises, remove workflow ex --- aio.html | 210 ++++++++++-------- cell_type_annotation.html | 155 +++++++------ eda_qc.html | 20 +- ..._annotation-rendered-unnamed-chunk-8-1.png | Bin 0 -> 23830 bytes ..._annotation-rendered-unnamed-chunk-9-1.png | Bin 0 -> 60271 bytes hca.html | 8 +- images.html | 6 +- instructor/aio.html | 210 ++++++++++-------- instructor/cell_type_annotation.html | 155 +++++++------ instructor/eda_qc.html | 20 +- instructor/hca.html | 8 +- instructor/images.html | 6 +- instructor/intro-sce.html | 12 +- instructor/multi-sample.html | 14 +- intro-sce.html | 12 +- md5sum.txt | 2 +- multi-sample.html | 14 +- pkgdown.yml | 2 +- 18 files changed, 458 insertions(+), 396 deletions(-) create mode 100644 fig/cell_type_annotation-rendered-unnamed-chunk-8-1.png create mode 100644 fig/cell_type_annotation-rendered-unnamed-chunk-9-1.png diff --git a/aio.html b/aio.html index daa989c..51b8bf2 100644 --- a/aio.html +++ b/aio.html @@ -590,7 +590,7 @@

Challenge

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Here we assign the sixth sample to sce6:

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Challenge

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Here we add a column called “conservation” that is just an integer sequence from 1 to the number of genes.

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Exercise 1

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The SingleCellExperiment constructor function can be used to create a new SingleCellExperiment object.

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Give me a hint

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Exercise 2

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Extension Challenge 1

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  1. You have to do tons of book-keeping! If you perform a QC step @@ -1155,7 +1155,7 @@

    Challenge

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    OUTPUT