From 4bf96c53d77c13f47baf0fd7dfc2a910d9d7230f Mon Sep 17 00:00:00 2001 From: nikhil153 Date: Tue, 25 May 2021 14:39:08 -0400 Subject: [PATCH] fixed episode names in headers --- README.md | 2 +- episodes/01-Image_Modalities.md | 2 +- episodes/02-Image_Cleanup.md | 6 +++--- episodes/03-Image_Spatial_Normalization.md | 6 +++--- episodes/04-Image_Quantification.md | 4 ++-- episodes/05-Image_QC.md | 2 +- episodes/06-Statistical_Analysis.md | 6 +++--- episodes/07-Reproducibility.md | 2 +- 8 files changed, 15 insertions(+), 15 deletions(-) diff --git a/README.md b/README.md index e02b39b5..2fd62a01 100644 --- a/README.md +++ b/README.md @@ -31,7 +31,7 @@ The primary goals of this workshop are: | --- | --- | --- | ||Setup|Download files required for the lesson| | 00:00 | 1. sMRI Modalities | How is MR image acquired? What anatomical features do different modalities capture? | -| 00:30 | 2. sMRI Image Clean-up | How do we remove intensity artifacts and extract brains? | +| 00:30 | 2. sMRI Clean-up | How do we remove intensity artifacts and extract brains? | | 01:15 | 3. sMRI Spatial Normalization | What are "coordinate spaces", "templates", "atlases"? What is image registration? | | 02:00 | 4. sMRI Quantification | How do we delineate brain anatomy and quantify phenotypes? | | 02:45 | 5. sMRI Quality-control | How do we identify image preprocessing failures? | diff --git a/episodes/01-Image_Modalities.md b/episodes/01-Image_Modalities.md index 67690d55..5eb92e17 100644 --- a/episodes/01-Image_Modalities.md +++ b/episodes/01-Image_Modalities.md @@ -1,5 +1,5 @@ --- -title: "Introduction to structural MR image modalities" +title: "sMRI modalities" teaching: 20 exercises: 10 questions: diff --git a/episodes/02-Image_Cleanup.md b/episodes/02-Image_Cleanup.md index a59cb9ac..130fcd9f 100644 --- a/episodes/02-Image_Cleanup.md +++ b/episodes/02-Image_Cleanup.md @@ -1,7 +1,7 @@ --- -title: "Image preprocessing with smriprep (Part 1: image clean-up)" -teaching: 20 -exercises: 10 +title: "sMRI Clean-up" +teaching: 30 +exercises: 15 questions: - "What are the sources of noise and artifacts in MR images?" - "How do we extract/mask the brain?" diff --git a/episodes/03-Image_Spatial_Normalization.md b/episodes/03-Image_Spatial_Normalization.md index 999d3daf..659b422f 100644 --- a/episodes/03-Image_Spatial_Normalization.md +++ b/episodes/03-Image_Spatial_Normalization.md @@ -1,7 +1,7 @@ --- -title: "Image preprocessing with smriprep (Part 2: spatial normalization)" -teaching: 20 -exercises: 10 +title: "sMRI Spatial Normalization" +teaching: 30 +exercises: 15 questions: - "What are reference coordinate systems" - "What are 'templates', 'atlases'?" diff --git a/episodes/04-Image_Quantification.md b/episodes/04-Image_Quantification.md index 3689e910..df254d44 100644 --- a/episodes/04-Image_Quantification.md +++ b/episodes/04-Image_Quantification.md @@ -1,7 +1,7 @@ --- -title: "Image segmentation and quantification" +title: "sMRI Segmentation and Quantification" teaching: 30 -exercises: 10 +exercises: 15 questions: - "How do we delineate brain anatomy and quantify phenotypes?" - "How to segment pathologies such as white-matter hyper-intensities?" diff --git a/episodes/05-Image_QC.md b/episodes/05-Image_QC.md index afd5ac91..24fa406f 100644 --- a/episodes/05-Image_QC.md +++ b/episodes/05-Image_QC.md @@ -1,5 +1,5 @@ --- -title: "Image quality control" +title: "sMRI Quality Control" teaching: 20 exercises: 10 questions: diff --git a/episodes/06-Statistical_Analysis.md b/episodes/06-Statistical_Analysis.md index 2185c92d..87f3e495 100644 --- a/episodes/06-Statistical_Analysis.md +++ b/episodes/06-Statistical_Analysis.md @@ -1,7 +1,7 @@ --- -title: "Statistical analysis" -teaching: 20 -exercises: 10 +title: "sMRI Statistical Analysis" +teaching: 30 +exercises: 15 questions: - "How to look at group differences in regional anatomical features?" objectives: diff --git a/episodes/07-Reproducibility.md b/episodes/07-Reproducibility.md index b37250f4..12975abc 100644 --- a/episodes/07-Reproducibility.md +++ b/episodes/07-Reproducibility.md @@ -1,5 +1,5 @@ --- -title: "Reproducibility considerations" +title: "sMRI Analysis: Reproducibility Considerations" teaching: 20 exercises: 10 questions: