diff --git a/code/01-scanner-to-computer.ipynb b/code/01-scanner-to-computer.ipynb index 58466e9..6de0045 100644 --- a/code/01-scanner-to-computer.ipynb +++ b/code/01-scanner-to-computer.ipynb @@ -11,13 +11,17 @@ "\n", "## Neuroimaging file formats\n", "\n", - "|Format Name | File Extension | Origin |\n", - "|---|---|---|\n", - "| DICOM | none | ACR/NEMA Consortium |\n", - "| Analyze | .img/.hdr | Analyze Software, Mayo Clinic |\n", - "| NIfTI | .nii | Neuroimaging Informatics Technology Initiative |\n", - "| MINC | .mnc | Montreal Neurological Institute |\n", - "| NRRD | .nrrd | |\n", + "| Format Name | File Extension | Origin/Group |\n", + "|-------------|----------------|--------------|\n", + "| [DICOM](https://www.dicomstandard.org/current) | none (*) | ACR/NEMA Consortium |\n", + "| [Analyze](https://eeg.sourceforge.net/ANALYZE75.pdf) | `.img`/`.hdr` | Analyze Software, Mayo Clinic |\n", + "| [NIfTI](https://nifti.nimh.nih.gov/) | `.nii` (**) | Neuroimaging Informatics Technology Initiative |\n", + "| [MINC](https://www.mcgill.ca/bic/software/minc) | `.mnc` | Montreal Neurological Institute |\n", + "| [NRRD](https://teem.sourceforge.net/nrrd/format.html) | `.nrrd` | Gordon L. Kindlmann |\n", + "| [MGH](https://surfer.nmr.mgh.harvard.edu/fswiki/FsTutorial/MghFormat) | `.mgz` or `.mgh` | Massachusetts General Hospital |\n", + "\n", + "(*) DICOM files typically have a `.dcm` file extension.\n", + "(**) Some files are typically compressed and their extension may incorporate the corresponding compression tool extension (e.g. `.nii.gz`).\n", "\n", "From the MRI scanner, images are initially collected in the DICOM format and can be converted to these other formats to make working with the data easier.\n", "\n", diff --git a/episodes/scanner-to-computer.md b/episodes/scanner-to-computer.md index 5228786..6b7b4c3 100644 --- a/episodes/scanner-to-computer.md +++ b/episodes/scanner-to-computer.md @@ -58,16 +58,18 @@ exercises: 10