diff --git a/ChangeLog.md b/ChangeLog.md index 89526a0..8ded383 100644 --- a/ChangeLog.md +++ b/ChangeLog.md @@ -1,5 +1,10 @@ -# SourceTracker2 0.1.0 +# sourcetracker2 changelog - * Initial Release - * Re-implements the Gibbs sampler from the original SourceTracker (see README.md) - * Supports multple jobs through `--jobs` +## 2.0.1-dev (changes since 2.0.1 go here) + +## 2.0.1 + + * Initial alpha release. + * Re-implements the Gibbs sampler from [@danknights's SourceTracker.](https://github.com/danknights/sourcetracker). + * [click](http://click.pocoo.org/)-based command line interface through the ``sourcetracker2`` command. + * Supports parallel execution using the `--jobs` parameter. diff --git a/README.md b/README.md index a67a41c..ae619e2 100644 --- a/README.md +++ b/README.md @@ -35,7 +35,7 @@ SourceTracker2 is Python 3 software. The easiest way to install it is using Anac To install SourceTracker 2 using Anaconda, run the following commands: ```bash -conda create -n st2 python=3.5 numpy scipy h5py hdf5 +conda create -n st2 python=3.5 numpy scipy h5py hdf5 matplotlib source activate st2 pip install sourcetracker ``` @@ -151,7 +151,7 @@ strategy** `sourcetracker2 gibbs -i otu_table.biom -m map.txt -o example4/ --burnin 100` **Calculate the proportion of each source in each sink, using a sink -rarefaction depth of 2500** +rarefaction depth of 1500** `sourcetracker2 gibbs -i otu_table.biom -m map.txt -o example5/ --sink_rarefaction_depth 2500` **Calculate the proportion of each source in each sink, using ipyparallel to run in parallel with 5 jobs** diff --git a/setup.py b/setup.py index d2381d0..e50488d 100644 --- a/setup.py +++ b/setup.py @@ -9,7 +9,7 @@ from setuptools import find_packages, setup -__version__ = '2.0.1' +__version__ = '2.0.1-dev' classes = """ Development Status :: 1 - Planning diff --git a/sourcetracker/__init__.py b/sourcetracker/__init__.py index ffd4f0a..9af96c4 100644 --- a/sourcetracker/__init__.py +++ b/sourcetracker/__init__.py @@ -7,5 +7,5 @@ # The full license is in the file LICENSE, distributed with this software. # ---------------------------------------------------------------------------- -__version__ = '2.0.1' +__version__ = '2.0.1-dev' _readme_url = "https://github.com/biota/sourcetracker2/blob/master/README.md"