Releases: cancervariants/variation-normalization
Releases · cancervariants/variation-normalization
0.10.0
What's Changed
- cicd: allow missing credentials in aws creds detection by @jsstevenson in #569
- feat!: add
sequence
toSequenceLocation
by @korikuzma in #570 - fix: update ga4gh.vrs + add back response_model configs for FastAPI by @korikuzma in #571
- docs: update vrs versioning by @korikuzma in #572
Full Changelog: 0.9.1...0.10.0
0.9.1
What's Changed
- fix: version imports by @korikuzma in #565
- chore: remove unused files by @korikuzma in #568
- style: ruff format by @korikuzma in #567
- fix: TypeError for params that accept union of enums by @korikuzma in #566
- chore: update ebextensions for downloading latest seqrepo instance by @korikuzma in #564
Full Changelog: 0.9.0...0.9.1
0.9.0
What's Changed
- build: reorganize build metadata (#549) by @jsstevenson in #550
- chore: update license by @jsstevenson in #547
- cicd: require priority label on PRs by @jsstevenson in #546
- cicd: test install on 3.12 by @jsstevenson in #544
- docs: readme glow-up by @jsstevenson in #548
- cicd: update precommit by @jsstevenson in #558
- cicd: update workflows/templates from template repo by @jsstevenson in #556
- feat: enable more precise logging configuration by @jsstevenson in #559
- cicd: update precommit dependency in pipfile by @jsstevenson in #560
- style: update ruff by @jsstevenson in #557
- build!: update ga4gh.vrs, cool-seq-tool, + gene-normalizer by @korikuzma in #561
- build: update requirements and build system by @jsstevenson in #555
- docs: update seqrepo version to 2024-02-20 by @korikuzma in #562
- fix(cicd): add reference to stalebot by @korikuzma in #563
Full Changelog: 0.8.2...0.9.0
0.8.2
What's Changed
- test: only check vrs ids on certain tests by @korikuzma in #540
- build!: udpate ga4gh.vrs version by @korikuzma in #542
Full Changelog: 0.8.1...0.8.2
0.8.1
What's Changed
- build: pin ga4gh.vrs dependency by @korikuzma in #539
Full Changelog: 0.8.1-dev0...0.8.1
0.8.1-dev0
What's Changed
- feat!: add more support for queries in gnomad_vcf_to_protein by @korikuzma in #529
- style: replace black with ruff by @korikuzma in #532
- build: modernize build configs by @korikuzma in #533
- fix: handle cases where gene_context is not found by @korikuzma in #536
- cicd: fix elastic beanstalk deployment by @korikuzma in #537
Full Changelog: 0.8.0-dev1...0.8.1-dev0
0.8.0-dev1
What's Changed
- fix: hgvs/free text dup/del end positions for definite ranges by @korikuzma in #525
- build!: update cool-seq-tool + ga4gh.vrs versions by @korikuzma in #528
- Temporarily removes gnomad_vcf_to_protein
Full Changelog: 0.8.0-dev0...0.8.0-dev1
0.6.0-dev1
What's Changed
- cicd: update release.yml (publish python distribution to pypi) by @korikuzma in #513
- fix: pin versions + fix /translate_identifier by @korikuzma in #516
- feat: expose cool-seq-tool feature overlap endpoint by @korikuzma in #523
Full Changelog: 0.6.0-dev0...0.6.0-dev1
0.8.0-dev0
What's Changed
- fix: catch errors for
(#_#)_#dup
and#_(#_#)dup
HGVS exprs by @korikuzma in #419 - docs: document branch / version tracking by @korikuzma in #403
- ci: add GH action for installing deps + remove requirements (metaschema) by @korikuzma in #452
- chore: update elastic beanstalk commands by @korikuzma in #456
- feat: add parsed to copy number change endpoint (metaschema) by @korikuzma in #453
- fix!:
/parsed_to_cn_var
should accept number, definite range, and indefinite range by @korikuzma in #455 - feat: add do_liftover param in parsed to copy number endpoints (metaschema) by @korikuzma in #459
- refactor!: parsed to copy number should accept request body (metaschema) by @korikuzma in #460
- build: update ga4gh.vrsatile.pydantic version by @korikuzma in #461
- fix: Copy Number Count copies should be Number or Indef/Def Range by @korikuzma in #468
- fix: allow comparator to be set in start/end values by @korikuzma in #469
- refactor!: clean up app (metaschema) by @korikuzma in #494
- feat!: update to vrs 2.0-alpha by @korikuzma in #512
- cicd: update release.yml (publish python distribution to pypi) by @korikuzma in #514
- build!: update depdency versions by @korikuzma in #517
- fix: vrs-python translator import statement by @korikuzma in #520
Full Changelog: 0.7.0-dev7...0.8.0-dev0
0.6.0-dev0
What's Changed
- analysis: civic + moa variant analysis by @korikuzma in #439
- ci: add GH action for installing deps + remove requirements by @korikuzma in #442
- revert: analysis: civic + moa variant analysis (#439) by @korikuzma in #446
- build: update ga4gh.vrsatile.pydantic version by @korikuzma in #462
- cicd: update sc_product_id by @korikuzma in #472
- refactor! by @korikuzma in #503
Full Changelog: 0.5.5...0.6.0-dev0