From f78084c082f7bf562d7e21512ac8556821cee385 Mon Sep 17 00:00:00 2001 From: hy395 Date: Mon, 11 Dec 2023 14:30:32 -0800 Subject: [PATCH] update dependency --- .gitignore | 3 +++ requirements.txt | 12 +++++++----- scnym.egg-info/PKG-INFO | 11 ++++++----- scnym.egg-info/SOURCES.txt | 12 ++++++++++++ scnym.egg-info/requires.txt | 11 ++++++----- scnym/__pycache__/api.cpython-38.pyc | Bin 34506 -> 34712 bytes 6 files changed, 34 insertions(+), 15 deletions(-) create mode 100644 .gitignore diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..f16cf9f --- /dev/null +++ b/.gitignore @@ -0,0 +1,3 @@ +dist/ +**/__pycache__/ +.ipynb_checkpoints/ diff --git a/requirements.txt b/requirements.txt index 448748f..f497aa5 100644 --- a/requirements.txt +++ b/requirements.txt @@ -1,19 +1,20 @@ -anndata==0.7.4 +anndata==0.8.0 ConfigArgParse==1.1 -h5py==2.10.0 +h5py==3.10.0 leidenalg==0.8.0 louvain==0.7.0 numba==0.49.1 -numpy==1.18.2 +numpy==1.21.0 numpy-groupies==0.9.13 -pandas==1.0.4 +pandas==1.5.3 pytest==5.4.1 -python-dateutil==2.8.1 +python-dateutil==2.8.2 PyYAML==5.3.1 requests==2.26.0 requests-cache==0.5.2 requests-oauthlib==1.3.0 requests-toolbelt==0.9.1 +matplotlib==3.6.3 scanpy==1.6.0 scikit-learn==0.22.2.post1 scikit-misc==0.1.3 @@ -28,3 +29,4 @@ tqdm==4.44.1 umap-learn==0.3.10 urllib3==1.26.6 protobuf==3.20.* + diff --git a/scnym.egg-info/PKG-INFO b/scnym.egg-info/PKG-INFO index 1e5d581..7fb0b57 100644 --- a/scnym.egg-info/PKG-INFO +++ b/scnym.egg-info/PKG-INFO @@ -11,22 +11,23 @@ Classifier: Intended Audience :: Science/Research Classifier: Topic :: Scientific/Engineering :: Bio-Informatics Requires-Python: >=3.6 License-File: LICENSE -Requires-Dist: anndata==0.7.4 +Requires-Dist: anndata==0.8.0 Requires-Dist: ConfigArgParse==1.1 -Requires-Dist: h5py==2.10.0 +Requires-Dist: h5py==3.10.0 Requires-Dist: leidenalg==0.8.0 Requires-Dist: louvain==0.7.0 Requires-Dist: numba==0.49.1 -Requires-Dist: numpy==1.18.2 +Requires-Dist: numpy==1.21.0 Requires-Dist: numpy-groupies==0.9.13 -Requires-Dist: pandas==1.0.4 +Requires-Dist: pandas==1.5.3 Requires-Dist: pytest==5.4.1 -Requires-Dist: python-dateutil==2.8.1 +Requires-Dist: python-dateutil==2.8.2 Requires-Dist: PyYAML==5.3.1 Requires-Dist: requests==2.26.0 Requires-Dist: requests-cache==0.5.2 Requires-Dist: requests-oauthlib==1.3.0 Requires-Dist: requests-toolbelt==0.9.1 +Requires-Dist: matplotlib==3.6.3 Requires-Dist: scanpy==1.6.0 Requires-Dist: scikit-learn==0.22.2.post1 Requires-Dist: scikit-misc==0.1.3 diff --git a/scnym.egg-info/SOURCES.txt b/scnym.egg-info/SOURCES.txt index 334f7bb..1e4a6c6 100644 --- a/scnym.egg-info/SOURCES.txt +++ b/scnym.egg-info/SOURCES.txt @@ -34,6 +34,18 @@ scnym.egg-info/dependency_links.txt scnym.egg-info/entry_points.txt scnym.egg-info/requires.txt scnym.egg-info/top_level.txt +scnym/__pycache__/__init__.cpython-38.pyc +scnym/__pycache__/api.cpython-38.pyc +scnym/__pycache__/attributionpriors.cpython-38.pyc +scnym/__pycache__/dataprep.cpython-38.pyc +scnym/__pycache__/distributions.cpython-38.pyc +scnym/__pycache__/interpret.cpython-38.pyc +scnym/__pycache__/losses.cpython-38.pyc +scnym/__pycache__/main.cpython-38.pyc +scnym/__pycache__/model.cpython-38.pyc +scnym/__pycache__/predict.cpython-38.pyc +scnym/__pycache__/trainer.cpython-38.pyc +scnym/__pycache__/utils.cpython-38.pyc tests/test_api.py tests/test_da.py tests/test_dataprep.py diff --git a/scnym.egg-info/requires.txt b/scnym.egg-info/requires.txt index 448748f..e9ae8ff 100644 --- a/scnym.egg-info/requires.txt +++ b/scnym.egg-info/requires.txt @@ -1,19 +1,20 @@ -anndata==0.7.4 +anndata==0.8.0 ConfigArgParse==1.1 -h5py==2.10.0 +h5py==3.10.0 leidenalg==0.8.0 louvain==0.7.0 numba==0.49.1 -numpy==1.18.2 +numpy==1.21.0 numpy-groupies==0.9.13 -pandas==1.0.4 +pandas==1.5.3 pytest==5.4.1 -python-dateutil==2.8.1 +python-dateutil==2.8.2 PyYAML==5.3.1 requests==2.26.0 requests-cache==0.5.2 requests-oauthlib==1.3.0 requests-toolbelt==0.9.1 +matplotlib==3.6.3 scanpy==1.6.0 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