From d7e90a780b41ab5103eb7d560cc7070521cbf09f Mon Sep 17 00:00:00 2001 From: ramya Date: Tue, 21 Jan 2020 16:26:33 -0500 Subject: [PATCH] Added all sample zscore profiles --- core/src/main/scripts/importer/allowed_data_types.txt | 10 ++++++++++ .../scripts/test_data/study_wr_clin/result_report.html | 2 +- 2 files changed, 11 insertions(+), 1 deletion(-) diff --git a/core/src/main/scripts/importer/allowed_data_types.txt b/core/src/main/scripts/importer/allowed_data_types.txt index 39d6bfbf28f..d2d276c6e22 100644 --- a/core/src/main/scripts/importer/allowed_data_types.txt +++ b/core/src/main/scripts/importer/allowed_data_types.txt @@ -35,6 +35,16 @@ MRNA_EXPRESSION CONTINUOUS mrna_seq_fpkm_capture MRNA_EXPRESSION Z-SCORE mrna_seq_fpkm_capture_Zscores MRNA_EXPRESSION CONTINUOUS mrna_seq_fpkm_polya MRNA_EXPRESSION Z-SCORE mrna_seq_fpkm_polya_Zscores +MRNA_EXPRESSION Z-SCORE mrna_U133_all_sample_Zscores +MRNA_EXPRESSION Z-SCORE mrna_all_sample_Zscores +MRNA_EXPRESSION Z-SCORE rna_seq_mrna_median_all_sample_Zscores +MRNA_EXPRESSION Z-SCORE mrna_median_all_sample_Zscores +MRNA_EXPRESSION Z-SCORE rna_seq_v2_mrna_median_all_sample_Zscores +MRNA_EXPRESSION Z-SCORE mrna_seq_cpm_all_sample_Zscores +MRNA_EXPRESSION Z-SCORE mrna_seq_tpm_all_sample_Zscores +MRNA_EXPRESSION Z-SCORE rna_seq_mrna_capture_all_sample_Zscores +MRNA_EXPRESSION Z-SCORE mrna_seq_fpkm_capture_all_sample_Zscores +MRNA_EXPRESSION Z-SCORE mrna_seq_fpkm_polya_all_sample_Zscores METHYLATION CONTINUOUS methylation_hm27 METHYLATION CONTINUOUS methylation_hm450 FUSION FUSION fusion diff --git a/core/src/test/scripts/test_data/study_wr_clin/result_report.html b/core/src/test/scripts/test_data/study_wr_clin/result_report.html index 6bc6407a5b1..1f9225325e1 100644 --- a/core/src/test/scripts/test_data/study_wr_clin/result_report.html +++ b/core/src/test/scripts/test_data/study_wr_clin/result_report.html @@ -182,7 +182,7 @@

meta_expression_median.txt

Error – – - Invalid stable id for genetic_alteration_type 'MRNA_EXPRESSION', data_type 'Z-SCORE'; expected one of [mrna_U133_Zscores, rna_seq_mrna_median_Zscores, mrna_median_Zscores, rna_seq_v2_mrna_median_Zscores, mirna_median_Zscores, mrna_merged_median_Zscores, mrna_zbynorm, mrna_seq_tpm_Zscores, mrna_seq_cpm_Zscores, rna_seq_mrna_capture_Zscores, mrna_seq_fpkm_capture_Zscores, mrna_seq_fpkm_polya_Zscores] + Invalid stable id for genetic_alteration_type 'MRNA_EXPRESSION', data_type 'Z-SCORE'; expected one of [mrna_U133_Zscores, rna_seq_mrna_median_Zscores, mrna_median_Zscores, rna_seq_v2_mrna_median_Zscores, mirna_median_Zscores, mrna_merged_median_Zscores, mrna_zbynorm, mrna_seq_tpm_Zscores, mrna_seq_cpm_Zscores, rna_seq_mrna_capture_Zscores, mrna_seq_fpkm_capture_Zscores, mrna_seq_fpkm_polya_Zscores, mrna_U133_all_sample_Zscores, mrna_all_sample_Zscores, rna_seq_mrna_median_all_sample_Zscores, mrna_median_all_sample_Zscores, rna_seq_v2_mrna_median_all_sample_Zscores, mrna_seq_cpm_all_sample_Zscores, mrna_seq_tpm_all_sample_Zscores, rna_seq_mrna_capture_all_sample_Zscores, mrna_seq_fpkm_capture_all_sample_Zscores, mrna_seq_fpkm_polya_all_sample_Zscores] mrna