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base repository: cBioPortal/cbioportal
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base: def262c3083aac44ac2055c6d76c305b374553e7
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head repository: cBioPortal/cbioportal
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compare: 0e9c38783f1c0f85a9c1216cfe457fdbcc558494
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  • 1 commit
  • 2 files changed
  • 1 contributor

Commits on Apr 12, 2023

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    0e9c387 View commit details
Showing with 18 additions and 4 deletions.
  1. +16 −1 docs/{Database-Migration.md → MSK-Maintenance.md}
  2. +2 −3 docs/SUMMARY.md
17 changes: 16 additions & 1 deletion docs/Database-Migration.md → docs/MSK-Maintenance.md
Original file line number Diff line number Diff line change
@@ -37,8 +37,23 @@ In the database migration process, we are going to have two main steps: building
- `cd /data/portal-cron/git-repo/pipelines-configuration/build-importer-jars`
- (Optional) Remove existing jars
- `rm *.jar`
- Build all importers at once
- Build all importers at once (build all importers except cmo-pipelines)
- `sh buildproductionjars.sh -sd=true -sgp=true -b=importers`
- Available parameters:
- [--cbioportal-git-hash|-cgh=<cbioportal_commit_hash>]
- [--skip-deployment|-sd=<true|false>]
- [--skip-git-pull|-sgp=<true|false>]
- [--build|-b=<build_specifier>], build_specifier should be one of the following
- all (build for all artifacts)
- importers (all importers except cmo-pipelines)
- cmo-pipelines (cmo-pipelines artifacts only)
- triage-cmo-importer
- msk-dmp-importer
- msk-cmo-importer
- public-importer
- genie-aws-importer
- genie-archive-importer
- hgnc-importer

### Updating Database Scheme
Database needs to be updated one by one, we have four main databases: triage, private, genie, and public. Take triage database as an example.
5 changes: 2 additions & 3 deletions docs/SUMMARY.md
Original file line number Diff line number Diff line change
@@ -8,10 +8,10 @@
* [Frequently Asked Questions](user-guide/faq.md)
* [Overview of Resources](user-guide/overview.md)
* [Page Specific Resources](user-guide/by-page.md)
* [Web API and API Clients](web-API-and-Clients.md)
* [OQL](user-guide/oql.md)
* [News](News.md)
* [Genie News](News-Genie.md)
* [Web API and API Clients](web-API-and-Clients.md)
* [Deployment](deployment/README.md)
* [Architecture overview](Architecture-Overview.md)
* [Hardware Requirements](Hardware-Requirements.md)
@@ -56,11 +56,10 @@
* [Importing Gene Panels](Import-Gene-Panels.md)
* [Study View Customization with Priority Data](deployment/customization/Studyview.md)
* [cBioPortal Maintenance](deployment/cbioportal-maintenance/README.md)
* [MSK Maintenance]()
* [Database Migration / Importer Update](Database-Migration.md)
* [Updating your cBioPortal Database Scheme](Updating-your-cBioPortal-installation.md)
* [Update genes and gene aliases](Updating-gene-and-gene_alias-tables.md)
* [Migration Guide](Migration-Guide.md)
* [MSK Maintenance](MSK-Maintenance.md)
* [Development](documentation/docs/README.md)
* [Feature Development Guide](feature-development-guide.md)
* [cBioPortal Entity-relationship Diagram](cBioPortal-ER-Diagram.md)