diff --git a/docs/user-guide/faq.md b/docs/user-guide/faq.md index f0acb7c24c2..5c55ac9f4e1 100644 --- a/docs/user-guide/faq.md +++ b/docs/user-guide/faq.md @@ -244,12 +244,12 @@ By contrast, the high-level thresholds are calculated on a sample-by-sample basi | TCN = 0 | -2 | Deep loss | | TCN = 1 | -1 | Single-copy loss | | TCN = 2 | 0 | Diploid | -| 2 < TCN < 6 | 1 | Low-level gain | -| 6 ≤ TCN | 2 | Amplification | +| 2 < TCN < 7 | 1 | Low-level gain | +| 7 ≤ TCN | 2 | Amplification | where TCN is the total copy number from ASCAT. -The final conversion threshold (6 ≤ TCN) is somewhat flexible and can vary between different studies depending on the data used. We chose 6 and applied it to all GDC studies after seeing that it resulted in the most consistency between GDC TCGA and PanCancer Atlas. +The final conversion threshold (7 ≤ TCN) is somewhat flexible and can vary between different studies depending on the data used. We chose 7 and applied it to all GDC studies after seeing that it resulted in the most consistency between GDC TCGA and PanCancer Atlas. ### RNA #### Does the portal store raw or probe-level data?