From 807b70dbf16ccb09e44bf62051a3cedc9aeb533b Mon Sep 17 00:00:00 2001 From: David Lougheed Date: Thu, 18 Jan 2024 14:31:24 -0500 Subject: [PATCH] chore(prod): try to fix vcf chr transform for node2 --- epivar-prod/node2/config.js | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/epivar-prod/node2/config.js b/epivar-prod/node2/config.js index 9488d5ff..775219df 100644 --- a/epivar-prod/node2/config.js +++ b/epivar-prod/node2/config.js @@ -38,8 +38,8 @@ module.exports = { vcfSampleNameConverter: name => name.split('_')[1], // name => name /* - * VCF contigs have correct format, use identity function (default value) + * VCF contigs have chr prefix; ensure we prepend this without duplication. */ - // vcfChrTransform: (chr) => chr, + vcfChrTransform: (chr) => "chr" + chr.replace(/^chr/, ""), }, };