jenkins_wrapper.sh

#!/bin/bash
set -eu -o pipefail

echo "Launching MoH wrapper..."

##################################################
# Setup module
module load mugqic/python/3.10.4

##################################################
# STEP 1: Update file paths and timestamps in DB
echo "-> Running MOH_Check_Progress.py..."
./MOH_Check_Progress.py
echo -e "\n"

# Make sure previous job is done interacting with db
sleep 30

##################################################
# STEP 2: Update metrics in DB
echo "-> Running Metrics_Update.py..."
./Metrics_Update.py
echo -e "\n"

# Make sure previous job is done interacting with db
sleep 30

##################################################
# STEP 3: Update CSV files after DB modification
echo "-> Running Create_CSVs.sh..."
./Create_CSVs.sh
echo -e "...Done.\n"

# Make sure previous job is done interacting with db
# sleep 30

##################################################
# STEP 4: Deliver data
#echo "Running MOH_ln_output.py ..."
#./MOH_ln_output.py

echo "Finished MoH_wrapper execution."