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example_input.phy
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example_input.phy
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157 35
CHCH_BX1191 NASANCCNCAAAGNGACAGGNGTCCCGNGNATCGA
CHCH_BX1193 NNCACCCNCAAAGNGACAGGNGTNCNGNGNATCGA
DSAZ_BX1216 NNNNNCNNNANNNNGNNAGNNNNNNNGNNNNNNNN
DSNM_BX88 CRGANCCNNNAAGNNNNAGNCNTNNCGGGNATCGA
DSNM_BX94 CRGANCCNNNANGNGNNAGNNNTNNNGGNGNTCGN
DSNM_BXDS02 CRGANCCNNAAAGNGANAGNCNTCNCGGGGNTCGA
EAAL_BX1380 NNNNCCCNNNANGNNNCANGNGNNNCGNNNNNNNN
EAAL_BX1387 NNNNNNNNNNNNNNNNCNNGNGNNNNNNNNNNNNN
EAAL_BX211 NNNNCCNNNNNNNGGNCANGNNTNCNNGNGANNGA
EAAL_BXEA27 CANACCCCNNNANGNNCAGGYGTCCCGNGGATCGA
EAGA_BX217 CNGANCNNNANANGGACAGGCGTNCCGGNGATNGA
EAGA_BX219 CAGACCCCCAAANGGNCAGGCGTCCCGGGGATCGA
EAGA_BX220 CAGACCCCCAAAGGGAMAGGNGTCCCGGGGANCNA
EAGA_BX473 CNNANCNNNNANGGGNCAGGNGTCCCGGNGATNGA
EAGA_BXEA14 NNNNCNNNNNNNNNNNNNNNNNNNNNNNNNNTNNN
EAGA_BXEA19 NAGANCCCCAAAGNGACAGGNGTCCCGGGNATCGA
EAGA_BXEA21 CAGACCCNCANAGGRACAGGCNTCCCGGGGAKCGA
EAGA_BXEA25 NAGANCCCCNNAGNNNCAGGNGTNCCGRGNATCGG
EAGA_BXEA26 CAGASCCCYANAGGGACAGGCGTCCCGGGGATCGA
EAIL_BX33 CAGANCCCNAAAGGGACAGGNATCCCGGGGATCGA
EAIL_BXIL12 NAGACCCCCAAAGGGACAGGCRTCCCGGGGATTGA
EAIL_BXIL15 CAGACCCCCANAGGGACAGGCRTCCCGGGNATCGA
EAIL_BXIL16 NAGACCCCCAAAGNGACAGGNGTCCCGAGGATCGA
EAIL_BXIL18 CAGANCCCCAAAGNGACAGGCGTCCCGGGNATCGA
EAIL_BXIL19 NAGACCCCCANAGNGACAGGCGTCCCGGNGATCGA
EAIL_BXIL21 CAGACCCCNRNAGNGACAGGCNTCCCGGNGATCGA
EAIL_BXIL46 CAGANCCCNAAANNGACAGGCGTCCCGNGGATCGA
EAIL_BXIL51 CAGANCCCCAAAGGGACAGGCNTCCCGRGGATCGA
EAIL_BXIL53 NAGANCCCCANAGGGACAGGNGTCCCGNGNNTCGA
EAIL_BXIL56 CAGACCCCCAAAGGGACAGGCGTCCCGGGGATCGA
EAIL_BXIL62 CAGANCCCCANAGNGACAGGCGTCCCGGGGATCGA
EAIL_BXIL70 CAGACCCCCAAAGGGACAGGCGTCCCGGGGATCGA
EAKY_BX1027 CANACCNCCAAANGGACAGGCNNNNCGNNGATNNA
EAKY_BX26 NNNACNNNCNNANGGNCNGNNNNNNNGNNGNNNNN
EAKY_BX27 CNNNCCNCCNAANGGACAGGCNNNNCGGNGATNNA
EAMS_BXEA28 CAGANCCCCAAANGGACAGGCGTCCCGGSGAGCGA
EANC_BX316 CANACNCNCANAGGGACAGGCGTCCCGGNGATNGA
EANC_BX318 CNNNCNCNNNAANNGACAGGCGNCNCRGGGATCGA
EANY_BXEA11 NNNNCNNNNNNNNGNNNANNNNNNNNRNNGNNNNN
EAPA_BXEA13 NNNACCNCYAANNGNACRGGCNNNNNGNGNNNCGA
EARI_BX1608 CNNANNNCNANNNGNNCAGNCNNNNNNNNNNNNNN
EASC_BX232 NAGACCCNNAAAGGGNCAGGCGTCCCGGGGATCGA
EASC_BX235 CAGACCCCCAAAGGGNCAGGCGTCCCGGSGATCGA
EATN_BX35 NNNNCNNNNNNNNNNNNANNNGNNNNNNNGANNNN
EAVA_BX103 CNNACNNNCNNANNNNCANNCNNNNNNNNGNTNNA
EAVA_BX104 NNNANCNNNANNGNNACAGGCGTCNCGNNNANNNA
EAWV_BX449 NNNACCNNCAAAGGGNCAGGCGTNNCNGNNNTNGA
FLFL_BX937 CAGACNNCNAAAGGGACAGGCGNNCCGRGGATCGA
FLFL_BXFL01 NAGMCCCCNAAAGNGACAGGCGNNCCGGNGATCGA
FLFL_BXFL04 CNNACCNCNNNANGGACAGGCGNNCCGNNGATCNN
GUFL_BX503 NAGACCCCCAAAGNNACAGGNGTCCCGGNNATCGA
GUFL_BX509 NNNNCCNNNNNNGNNNCANNNGTNCNNNNNNNNNN
GUFL_BX628 NNNACNNNCNAAGNNNCANGNGNNNCGNNNNNNNN
GUFL_BX684 NAGANCCCCAAAGNNACAGGNGTCCCGGGNNTCGA
GUFL_BX685 CAGACCCCCAAAGGGNCAGGNGTCCCGGGGANNGA
GUFL_BX933 NNGNCNCCCAAAGGGACANGNGTCCCGGGGATNGA
GUFL_BXGU07 CNNANCNCCAAAGGGACAGGCGNCCCGGGGATCNA
GUFL_BXGU08 CNNNNNNNCANANGGNCANNNGNNNCGNNGNNNNN
GUFL_BXGU10 CNNACCNCCANANGGACANNCNNNCCGGNGANNNA
GUFL_BXGU11 CNNACNNCCAAANGGACANGNGNCNCGRNGNTNNN
GUFL_BXGU13 CNNACCNCCAAANGGACAGGCGNCNCGNNGATNNN
GUFL_BXGU25 CAGACCNCCAAAGGGACAGGNNTCCYGGGGATNGA
GUFL_BXGU26 NANNNCNCNANNNGNACANNNGNNNCGGNGNNNNN
GUFL_BXGU27 CNNACCNCCANAGGGACAGGCGNCCCGGNGATCNA
GUFL_BXGU28 CNNACCNCNNNANGGACAGGNGNCNCGNNGANNNA
GUFL_BXGU29 CNNANCNNCNAANGGNCANNCGNNNCGNNGANNNN
GUFL_BXGU32 NAGANCCCCNAAGNGACAGGNGTCCCGGGNATCGA
GUFL_BXGU33 NAGANYCNCNNAGNGNCAGGNGTCCCGGGGATNGA
GULA_BX762 CAGACCCCCAAANGGACAGGCGTCCCGGGGATCGA
MXMX_BX1194 CAGACCCCNAAAGGGACAGGCGTCCNGGGGATCGA
MXMX_BX1195 NNGACCCCNAAAGNGACAGGNGTCCCGGGNATCGA
MXMX_BX1196 CAGACCCCNAAAGRNNCAGGCGTCCCGGGGNTCGA
OGCLGU01 CAGACNCCNAAAGGGANAGNCGTTCCGGGGANCGN
OGCLGU02 CAGANNCNNAAAGGGNNAGNCGTTCCGNGGANCGN
OGKPFP2120 CNNNCNNNNNNNNNNNNANNNNNNNNNNNNNNNNN
OGKPFP2994 CNNACNNNNANANGNNNANNNNNNYNGNNGNNNNN
ONIA_BX1435 CAGACCCCNANNGNGANNGNCNTCCNGGGGNTCGA
ONIL_BX32 CAGANCCCNAAAGNGANAGGNNTCCCGGGNNNCGA
ONIL_BXON01 CANACCCCCAAAGNGACAGGCGTCCCNGGGATNGA
ONIL_BXON02 NAGANCCCNANNGGNACAGGCGTCCCGNGGATCGA
ONIL_BXON04 CAGACCCCNAAAGNGANAGNCNTCCCGGGGATCGA
ONIL_BXON11 CAGACCCCNAAAGNGANAGNCGTCCCGGGGNTCGA
ONIL_BXON20 CAGACCCCNAAAGNGANAGNCNTCCNGGGGNTCGA
ONIL_BXON25 CAGACCCCNANAGNGACAGGCNTCCCGGGGATCGA
ONIL_BXON29 CAGACCCYNAAAGNGACAGGNGTCCCGGGNNTNGN
ONIL_BXON32 CAGANCCNNANAGNGANNGNCGTCCNGGGNNTCGA
ONIL_BXON33 CAGANCCNNAAAGNGANAGNCNTCCNGAGGNTCGA
ONIL_BXON41 CAGANCCCCAAAGNGACAGGCNTCCCGGGNNTCGA
ONIL_BXON43 CAGACCCCNAAAGNGANAGNCNTNCCGGGGNTCGA
ONWI_BX492 NNGANCCNNNAAGNNANNGNNNTNNCGRGNNTCGA
TCAL_BX1614 CAGANCCNNAAANNGACAGGNGTCCCGRGGATCGA
TCAL_BX1616 CNNACNNCCNAANGGNCAGGCGNCNCGGNGATNNN
TCAL_BX1618 NNNNNCCNNNNNGNNNCAGGNNNNCCGNGNNNNNA
TCAL_BX271 CAGANCCNCANAGGGNCAGGCGTCCCGGGGATCGA
TCAL_BX272 NAGACCCCCNAANNNACANGNGNCCCGNNNATCGA
TCAL_BX273 CAGANCCCNNAAGNNNCAGGNNWCCCNNSNATCGA
TCAL_BX279 CAGACCCNCANAGGGNCAGGNGTCCCGGGGATCGA
TCAL_BX280 CAGACCSCCANAGGGACRGGCATCCCGRSGATNGA
TCAL_BX281 NAGANCCNNNAARNNNCAGGNGNCCCGGGNANNGA
TCAL_BX282 NANANCCNCNNAGNNNCAGGNNTNCCGGNGNNNNA
TCAL_BX283 CNGACCCNNNANGGNACAGGCGTCCCGGGNATCGA
TCAL_BX289 NAGACCCCNANAGGGNCAGGCGTNCCGGNNTTCGA
TCAL_BX302 CAGACCCCCAAAGGGACAGGCGTCCCGGGGATCGA
TCAL_BX304 CAGACCCCCAAAGGGACAGGCNTCCCGGGGATCGA
TCAL_BX305 NNNACCCCCAAAGNGNCAGGNGTCCCRRGNATCGA
TCAL_BX310 NNNNNCCNNNAAGNNACAGGCNNNNCGGNNNNNKA
TCAL_BX326 NNNANNCNNNANNNGNCNNNNNNCCNRGNNANNNN
TCAL_BX327 CAGMNCCNCAAANGNACRGGNRTCCCGGGNANCGA
TCAL_BX592 NAGNCCCNCNAAGNNNCRGGNNNNNCGNGNANNNA
TCAL_BX612 NANACCCNCNAAGNNNCAGGNGTCCCGGGNATNGA
TCAL_BXTC01 NNNACCNCCANANGGACAGGCGNCNCGGNGATCNN
TCAL_BXTC09 CNNACCCCCANAGGGACAGRCGNCCCRGGGATCGA
TCAL_BXTC103 NAGACCCCCAAAGNGACAGGCGTCCCGNGGATCGA
TCAL_BXTC104 CAGACCCCCAAAGGGACAGGCGTCCCGGGGANCGR
TCAL_BXTC11 NNNNNNNCNNNNNGNNCAGNNNNNNCGGNGNNNNN
TCAL_BXTC12 CNNNCNNCCNRANGGACAGGCNNNNCGNNGNTNNN
TCAL_BXTC21 CNNNCCNCCNANNGNNCAGNCGNNNNRGNGATNNN
TCAL_BXTC24 CNNACNNNCNNANGGNCAGGCNNNCCGGNGANNNN
TCAL_BXTC29 NNNNCCNNCAAANGGACAGGCNNCNCGGNGNNNNN
TCAL_BXTC33 NNNACCNNNANNGNGACAGGCGNNCCNGNNANNGA
TCAL_BXTC39 CNNACCNCCANANGGACANGCGNCCCGNNGNTNNN
TCAL_BXTC63 NAGACCCCCAAAGNGACAGGCGTCCCGGGNATCGA
TCAL_BXTC65 NNNANNNNCNANNNNANANNNGNNNNNNNNNTNNN
TCAL_BXTC86 NNNACNNNNNNNGNNNCANGNNNNNCNNGNANNGN
TCAL_BXTC90 NANANCCCCAAANNNACAGGNGTCCCGGGNATCGA
TCAL_BXTC91 CANACCCCCANAGNGACRGGCGTCCCGGGGTTCGA
TCAL_BXTC92 NAGACCCCNAAAGNGACAGGNRTCCCGGGNATNGA
TCAL_BXTC93 NNNACCCCCANAGNNACAGGCGNCCCGGCNANCGA
TCAL_BXTC94 CAGANCCCYAAAGGGACAGGCGTCCCGGGGATCGA
TCAL_BXTC97 NAGACCCCCANAGNGACAGGCNTCCCGGGNANCGA
TCAL_BXTC98 CAGACCCCCAAAGGGACAGGCRTCCCGGGGATCGA
TCAL_BXTC99 CAGANCCCCAAAGGGACAGGCGTCCCRGGNATCGA
TCGA_BX300 NNNACNCNNNNANGGNCAGGCNNNCCGGNGNNNGA
TCGA_BX343 NNNNNCNNNNANGNNNNNNGNGNNNNNNNNNNNNR
TCGA_BX344 CAGACCCCCANAGNGNCAGGNGTCCCGGGGATNGA
TCGA_BX589 CNNANNNCNAAAGGGNCAGGCNNNCNGGGGNTNGN
TCGA_BXTC34 CAGACCCCCAAAGGGACAGGNGTCCNGGGGATCGA
TCGA_BXTC35 NNGACCCCCARAGGNACAGGCGTCCCGGGNATCGA
TCGA_BXTC36 CNGANCCNCNAAGNNNCANGCRTCCNGGGNATCGA
TCGA_BXTC46 NNNACCNNTNANGGGMCNNGCNNCCCGNGGNNCNA
TTAR_BX507 CAGACCCNCAAANNNACAGGCGTCCCGAGGTTCGA
TTAR_BX984 CAGACCCCNAANGNGACAGGCGTCCCGGGNTNCGA
TTAR_BX987 CAGANCCCCAAAGGGACAGGCGTCCCGNGGATCGA
TTLA_BX421 NANACCCCCAAAGNGACARGNGTNCCGAGNWTCGA
TTLA_BX422 NNNACCCCCAAAGNGACAGGNGTCCCGRCNNNCGA
TTLA_BX775 NNNACNNNNAANNGNACANGCNNNNCGASNATCNA
TTLA_BXTT13 CAGACCCCCAAAGNGACAGGNGTCCCGNSNATCGA
TTMO_BX109 CNNANCNNCNAANGGNCAGGNNNNNCGANGATNNA
TTMS_BX240 NAGACCCCCRNAGNGACAGGCGTYCCGNGNANCGA
TTMS_BX241 NNNACNNNNAAAGNGNCAGGCGTNNCGNNNANCNA
TTTX_BX11 CNNACCNNNAAANGGNCAGGNGNYCCGNNGANNNA
TTTX_BX15 CANACCNNCAAANGGACAGGCGNCNCGRNGANCNA
TTTX_BX16 CNNANCNCCAARNGGACAGGCGNNCCGNNRNNCNA
TTTX_BX19 CANANCCNNANAGGGACAGGCGTNNCGAGRNTCGA
TTTX_BX22 TANANCNNCAANGGGACAGGCGTNCCGGNGNNCGA
TTTX_BX224 CNNACCNCCAAAGGGNCAGGCGNCNCGAGGATCNA
TTTX_BX23 CNGACCCNCAAAGGGNCAGGNGTNCCGNGGNNNNA