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Error: please name your own initials in config file #4

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alex-berry opened this issue Jul 1, 2021 · 0 comments
Open

Error: please name your own initials in config file #4

alex-berry opened this issue Jul 1, 2021 · 0 comments

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@alex-berry
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Hi, I've been trying to get the docker container for Ricopili running on our HPC. I am trying to work through the tutorial but get the following error during preimputation:

"Error: please name your own initials in config file: /ricopili//ricopili.conf"

I see that the config file has NA for initials and email address by default. Is there a workaround to not require initials and email addresses when using Docker, since I am unable to edit the config file in the container?

This is the command that I ran to get that error:

docker run -v /path/to/ricopili/ricopili_tutorial_data/ -w path/to/ricopili/ricopili_tutorial_data/ bruggerk/ricopili:latest preimp_dir --dis sim --out hapgen_5cohorts

Thanks for any advice/assistance!

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