diff --git a/pipelines/skylab/atac/atac.wdl b/pipelines/skylab/atac/atac.wdl index 11ab27103e..24b3f103e0 100644 --- a/pipelines/skylab/atac/atac.wdl +++ b/pipelines/skylab/atac/atac.wdl @@ -559,7 +559,7 @@ task CreateFragmentFile { atac_gtf = "~{annotations_gtf}" preindex = "~{preindex}" atac_nhash_id = "~{atac_nhash_id}" - expected_cells = "~{atac_expected_cells}" + expected_cells = ~{atac_expected_cells} # calculate chrom size dictionary based on text file chrom_size_dict={}