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in create_or_update_sample_tables, use the sample_original from demux as the key value for rows rather than sample (i.e. use IDs with forward slashes not dashes) #539

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in create_or_update_sample_tables, use the sample_original from demux as the key value for rows rather than sample (i.e. use IDs with forward slashes not dashes) #539

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2 changes: 1 addition & 1 deletion pipes/WDL/tasks/tasks_terra.wdl
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Original file line number Diff line number Diff line change
Expand Up @@ -525,7 +525,7 @@ task create_or_update_sample_tables {
# grab the meta_by_filename values to create new sample->library (sample_set->sample) mappings
sample_to_libraries = {}
for library_id, data in library_meta_dict.items():
sample_id = data['sample']
sample_id = data['sample_original']
sample_to_libraries.setdefault(sample_id, [])
if library_id in df_library.index:
sample_to_libraries[sample_id].append(library_id)
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