From 0d60a78633e4289b9aafa187b5b98d6de414b447 Mon Sep 17 00:00:00 2001 From: Danny Park Date: Thu, 10 Aug 2023 13:42:58 -0400 Subject: [PATCH] hotfix for bug in output path --- pipes/WDL/tasks/tasks_ncbi.wdl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/pipes/WDL/tasks/tasks_ncbi.wdl b/pipes/WDL/tasks/tasks_ncbi.wdl index bcd46bc5c..7726266d0 100644 --- a/pipes/WDL/tasks/tasks_ncbi.wdl +++ b/pipes/WDL/tasks/tasks_ncbi.wdl @@ -60,7 +60,7 @@ task download_annotations { >>> output { - File combined_fasta = "~{combined_out_prefix}.fasta" + File combined_fasta = "combined/~{combined_out_prefix}.fasta" Array[File] genomes_fasta = glob("*.fasta") Array[File] features_tbl = glob("*.tbl") String viralngs_version = read_string("VERSION")