From 8e524bbcc8ad0fdc802d6451bd01021d5102842d Mon Sep 17 00:00:00 2001 From: Danny Park Date: Tue, 12 Apr 2022 13:24:41 -0400 Subject: [PATCH] bump pangolin docker --- pipes/WDL/tasks/tasks_sarscov2.wdl | 4 ++-- requirements-modules.txt | 2 +- 2 files changed, 3 insertions(+), 3 deletions(-) diff --git a/pipes/WDL/tasks/tasks_sarscov2.wdl b/pipes/WDL/tasks/tasks_sarscov2.wdl index 2619344dd..b39b76009 100644 --- a/pipes/WDL/tasks/tasks_sarscov2.wdl +++ b/pipes/WDL/tasks/tasks_sarscov2.wdl @@ -10,7 +10,7 @@ task pangolin_one_sample { Float? max_ambig String? analysis_mode Boolean update_dbs_now=false - String docker = "quay.io/staphb/pangolin:4.0.4-pdata-1.2.133" + String docker = "quay.io/staphb/pangolin:4.0.5-pdata-1.3" } String basename = basename(genome_fasta, ".fasta") command <<< @@ -91,7 +91,7 @@ task pangolin_many_samples { String? analysis_mode Boolean update_dbs_now=false String basename - String docker = "quay.io/staphb/pangolin:4.0.4-pdata-1.2.133" + String docker = "quay.io/staphb/pangolin:4.0.5-pdata-1.3" } command <<< set -ex diff --git a/requirements-modules.txt b/requirements-modules.txt index 18ebc5e81..ea3afe7db 100644 --- a/requirements-modules.txt +++ b/requirements-modules.txt @@ -7,5 +7,5 @@ broadinstitute/beast-beagle-cuda=1.10.5pre broadinstitute/ncbi-tools=2.10.7.10 nextstrain/base=build-20211012T204409Z andersenlabapps/ivar=1.3.1 -quay.io/staphb/pangolin=4.0.4-pdata-1.2.133 +quay.io/staphb/pangolin=4.0.5-pdata-1.3 nextstrain/nextclade=1.11.0