diff --git a/pipes/WDL/tasks/tasks_sarscov2.wdl b/pipes/WDL/tasks/tasks_sarscov2.wdl index c8b8fff97..bf64030fc 100644 --- a/pipes/WDL/tasks/tasks_sarscov2.wdl +++ b/pipes/WDL/tasks/tasks_sarscov2.wdl @@ -40,7 +40,7 @@ task nextclade_one_sample { grep ^aaDeletions transposed.tsv | cut -f 2 | grep -v aaDeletions > NEXTCLADE_AADELS } runtime { - docker: "neherlab/nextclade:0.11.1" + docker: "neherlab/nextclade:0.12.0" memory: "3 GB" cpu: 2 disks: "local-disk 50 HDD" @@ -86,7 +86,7 @@ task nextclade_many_samples { --output-tree "~{basename}".nextclade.auspice.json } runtime { - docker: "neherlab/nextclade:0.11.1" + docker: "neherlab/nextclade:0.12.0" memory: "14 GB" cpu: 16 disks: "local-disk 100 HDD" @@ -137,7 +137,7 @@ task pangolin_one_sample { grep ^lineage transposed.tsv | cut -f 2 | grep -v lineage > PANGOLIN_CLADE } runtime { - docker: "staphb/pangolin:2.1.7" + docker: "staphb/pangolin:2.1.7-pangolearn-2021-01-20" memory: "3 GB" cpu: 2 disks: "local-disk 50 HDD" diff --git a/requirements-modules.txt b/requirements-modules.txt index cfe37f698..da6d1ba5c 100644 --- a/requirements-modules.txt +++ b/requirements-modules.txt @@ -6,5 +6,5 @@ broadinstitute/beast-beagle-cuda=1.10.5pre broadinstitute/ncbi-tools=2.10.7.1 nextstrain/base=build-20201214T004216Z andersenlabapps/ivar=1.3 -staphb/pangolin=2.1.7 -neherlab/nextclade=0.11.1 +staphb/pangolin=2.1.7-pangolearn-2021-01-20 +neherlab/nextclade=0.12.0