From a7e4ebdd86e1876a352470d5ea03bf2c22b60034 Mon Sep 17 00:00:00 2001
From: golu099 <flavianegrete@gmail.com>
Date: Thu, 30 Nov 2023 12:58:04 -0500
Subject: [PATCH] sudo chmod

---
 pipes/WDL/tasks/tasks_megablast.wdl | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pipes/WDL/tasks/tasks_megablast.wdl b/pipes/WDL/tasks/tasks_megablast.wdl
index 1c3b3aaae..72bae72bb 100755
--- a/pipes/WDL/tasks/tasks_megablast.wdl
+++ b/pipes/WDL/tasks/tasks_megablast.wdl
@@ -36,7 +36,7 @@ task trim_rmdup_subsamp {
     }
     command <<<
         set -ex o pipefail
-        cat> ~{outBam} | chmod u+x ~{outBam}
+        cat> ~{outBam} | sudo chmod u+x ~{outBam}
         assembly.py --version | tee VERSION
         #BAM ->FASTQ-> OutBam? https://github.com/broadinstitute/viral-assemble/blob/80bcc1da5c6a0174362ca9fd8bc0b49ee0b4103b/assembly.py#L91
         assembly.py trim_rmdup_subsamp \