From 9794c36b734f62484b750c8f450eaf7ccc0d7ff2 Mon Sep 17 00:00:00 2001 From: llangit-broad Date: Wed, 16 Dec 2020 19:52:05 -0600 Subject: [PATCH 1/2] Added miniwdl dev env diagram --- README.md | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 717ceaf42..fbbace795 100644 --- a/README.md +++ b/README.md @@ -24,7 +24,9 @@ Workflows are continuously deployed to a [DNAnexus CI project](https://platform. ## Basic execution -The easiest way to get started is on a single, Docker-capable machine (your laptop, shared workstation, or virtual machine) using [miniWDL](https://github.com/chanzuckerberg/miniwdl). MiniWDL can be installed either via `pip` or `conda` (via conda-forge). After confirming that it works (`miniwdl run_self_test`, you can use [miniwdl run](https://miniwdl.readthedocs.io/en/latest/getting_started.html) to invoke WDL workflows from this repository. + + +The easiest way to get started is on a single, Python & Docker-capable machine (your laptop, shared workstation, or virtual machine) using [miniWDL](https://github.com/chanzuckerberg/miniwdl) as shown above. MiniWDL can be installed either via `pip` or `conda` (via conda-forge). After confirming that it works (`miniwdl run_self_test`, you can use [miniwdl run](https://miniwdl.readthedocs.io/en/latest/getting_started.html) to invoke WDL workflows from this repository. For example, to list the inputs for the assemble_refbased workflow: From 8c16bbe8c20e06c7ad3276eb43306196a868c605 Mon Sep 17 00:00:00 2001 From: llangit-broad Date: Thu, 17 Dec 2020 11:08:35 -0600 Subject: [PATCH 2/2] added miniwdl dev env diagram link updated to URL per your request --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index fbbace795..273eeb465 100644 --- a/README.md +++ b/README.md @@ -24,7 +24,7 @@ Workflows are continuously deployed to a [DNAnexus CI project](https://platform. ## Basic execution - + The easiest way to get started is on a single, Python & Docker-capable machine (your laptop, shared workstation, or virtual machine) using [miniWDL](https://github.com/chanzuckerberg/miniwdl) as shown above. MiniWDL can be installed either via `pip` or `conda` (via conda-forge). After confirming that it works (`miniwdl run_self_test`, you can use [miniwdl run](https://miniwdl.readthedocs.io/en/latest/getting_started.html) to invoke WDL workflows from this repository.