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DataModality.owx
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<Literal>Sid Cox</Literal>
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<Literal>Kathy Reinold</Literal>
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<Literal>Please cite The Broad Institute of Harvard and MIT, Data Sciences Platform.</Literal>
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<IRI>#0000001</IRI>
<Literal>This term attempts to characterize entities in terms of its channel of biological investigation. For example, activities that produce such results include assays, analysis pipelines, lab tests, and imaging -- x-ray, CT-scan, or microscopy as well as the data these activities generate.</Literal>
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<IRI>#0000001</IRI>
<Literal>data modality</Literal>
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<IRI>#0000001</IRI>
<Literal>biological data type</Literal>
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<IRI>#0000001</IRI>
<Literal>data category</Literal>
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<IRI>#0000001</IRI>
<Literal>Data modality describes the biological nature of information gathered as the result of an experimental activity, independent of the technology or methods used to produce the information.</Literal>
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<IRI>#0000002</IRI>
<Literal>epigenomic</Literal>
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<IRI>#0000002</IRI>
<Literal>A property that indicates this entity is related to the biological investigation of the epigenome.</Literal>
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<AnnotationProperty abbreviatedIRI="rdfs:label"/>
<IRI>#0000003</IRI>
<Literal>3D contact maps</Literal>
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<IRI>#0000004</IRI>
<Literal>DNA binding</Literal>
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<IRI>#0000005</IRI>
<Literal>histone modification location</Literal>
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<IRI>#0000006</IRI>
<Literal>transcription factor location</Literal>
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<IRI>#0000007</IRI>
<Literal>DNA chromatin accessibility</Literal>
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<IRI>#0000008</IRI>
<Literal>DNA methylation</Literal>
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<Literal>RNA binding</Literal>
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<Literal>genomic</Literal>
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<IRI>#0000010</IRI>
<Literal>A property that indicates this entity is related to the biological investigation of the genome.</Literal>
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<IRI>#0000011</IRI>
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<IRI>#0000012</IRI>
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<IRI>#0000012</IRI>
<Literal>WES</Literal>
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<AnnotationProperty abbreviatedIRI="rdfs:comment"/>
<IRI>#0000013</IRI>
<Literal>Definition from Genotyping (operation_3196) in edamontology.org. Need to add this as an equivalent class. Note that this is often performed by calling SNPs from assays. It it intended to differentiate from larger scale genomic sequencing -- exome, genome.</Literal>
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<IRI>#0000013</IRI>
<Literal>genotyping</Literal>
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<IRI>#0000013</IRI>
<Literal>Analyse DNA sequence data to identify differences between the genetic composition (genotype) of an individual compared to other individual's or a reference sequence.</Literal>
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<IRI>#0000014</IRI>
<Literal>whole genome</Literal>
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<IRI>#0000014</IRI>
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<Literal>A property that indicates this entity is related to the biological investigation of targeted elements of the transcriptome, such as microRNA counts.</Literal>
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