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Code organization

browser

Browser UI

  • about

    Information about the gnomAD project and browser (contributors, terms of use, etc).

    Stored in Markdown for easy updates and converted to HTML in the browser build.

  • build

    Browser build scripts.

  • help

    Content for help/FAQ pages.

    Stored in Markdown for easy updates and converted to HTML in the browser build.

  • src

    UI components.

data-pipeline

Data pipeline

  • caids

    Scripts related to fetching CAIDs from the ClinGen Allele Registry.

  • src/data_pipeline

    Main data pipelines.

dataset-metadata

Metadata about gnomAD datasets shared between the browser and API.

deploy

Scripts and configuration for browser deployment.

  • deployctl

    Code for deployctl tool.

  • dockerfiles

    Dockerfiles for all components.

  • manifests

    K8S manifests for all components.

development

Development environment, docs, and scripts.

graphql-api

GraphQL API

  • src

    • graphql

      • resolvers

        GraphQL resolvers connecting functions in src/queries to GraphQL.

      • types

        GraphQL schema definitions.

    • queries

      Elasticsearch queries and any necessary data transformation.

reads

Read data API and scripts.