From 2827cc55c9c024a925953973c5bec219f1155ed7 Mon Sep 17 00:00:00 2001 From: Rebecca Asch Date: Wed, 27 Oct 2021 11:29:45 -0400 Subject: [PATCH] make sure ExtractTask is run on all interval files (on branch) --- scripts/variantstore/wdl/GvsExtractCallset.wdl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/scripts/variantstore/wdl/GvsExtractCallset.wdl b/scripts/variantstore/wdl/GvsExtractCallset.wdl index d9d21787caf..1da0076939a 100644 --- a/scripts/variantstore/wdl/GvsExtractCallset.wdl +++ b/scripts/variantstore/wdl/GvsExtractCallset.wdl @@ -71,7 +71,7 @@ workflow GvsExtractCallset { service_account_json_path = service_account_json_path } - scatter(i in range(scatter_count) ) { + scatter(i in range(length(SplitIntervals.interval_files))) { call ExtractTask { input: gatk_override = gatk_override,