diff --git a/README.md b/README.md index 5558b011..239c9b0a 100644 --- a/README.md +++ b/README.md @@ -26,7 +26,6 @@ scGPT works with Python >= 3.7.13 and R >=3.6.1. Please make sure you have the c scGPT is available on PyPI. To install scGPT, run the following command: ```bash -pip install torch==1.13.0 pip install scgpt "flash-attn<1.0.5" # optional, recommended # As of 2023.09, pip install may not run with new versions of the google orbax package, if you encounter related issues, please use the following command instead: # pip install scgpt "flash-attn<1.0.5" "orbax<0.1.8" @@ -74,7 +73,7 @@ Please see our example code in [examples/finetune_integration.py](examples/finet - [ ] Finetuning examples for multi-omics integration, cell type annotation, perturbation prediction, cell generation - [x] Example code for Gene Regulatory Network analysis - [x] Documentation website with readthedocs -- [ ] Bump up to pytorch 2.0 +- [x] Bump up to pytorch 2.0 - [x] New pretraining on larger datasets - [x] Reference mapping example - [ ] Publish to huggingface model hub