Sample metadata for the Zika pipeline arrives in the samples/ directory. This should be mounted to samples/ in the Docker container.
samples/samples.tsv- line list of sample metadataruns.tsv- line list of run metadata
Must be tsv formatted. Keyed off of column headers rather than column order. sample_id is keyed to accession in fauna because these lack Genbank accessions.
| sample_id | strain | collection_date | country | division | location | usvi_sample_id | seq_platform |
|---|---|---|---|---|---|---|---|
| VI1 | USVI/1/2016 | 2016-09-28 | usvi | saint_croix | saint_croix | 16VI2395U | minion |
Must be tsv formatted. Keyed off of column headers rather than column order.
| run_name | barcode_id | sample_id | primer_scheme |
|---|---|---|---|
| usvi-library1-2016-12-10 | NB01 | VI1 | v2_500.amplicons.ver2 |