index.html

---
layout: default
title: bedford lab
categories:
 - home
---

<div class="row">
	<div class="col-lg-12">
		<object class="pull-left biglogo" data="/images/logo.svg" type="image/svg+xml"></object>
		<div class="bigtitle logobox">
			bedford lab research
		</div>
	</div>
</div>

<div class="bigspacer"></div>

<div class="row">
	<div class="col-lg-12">
		<div class="smallhead">
      <p>
        The Bedford Lab at the <a class="off" href="http://www.fredhutch.org/">Fred Hutch</a> works at the
        interface of evolution, epidemiology and virology. We apply computational and statistical methods to
        sequence data to understand viral dynamics, and reconstruct patterns of epidemic growth and
        geographic spread. We also link viral mutations to human population immunity and use this knowledge
        to forecast evolutionary outcomes.
      </p>
      <p>
        We maintain real-time views of pathogen evolution and epidemic spread at <a href="http://nextstrain.org">nextstrain.org</a>.
      </p>
		</div>
	</div>
</div>

<div class="bigspacer"></div>
<div class="bigspacer"></div>

<div class="row">
	<div class="col-lg-12">
		<div class="head">
			<a class="off" href="/blog/">Recent posts</a>
		</div>
		<div class="spacer"></div>
	</div>
</div>

<div class="row">
	{% for post in site.categories.blog limit:4 %}

	{% for member in site.categories.team %}
		{% if member.title == post.author %}
			{% assign author = member %}
		{% endif %}
	{% endfor %}

	<div class="col-lg-3 reduced-gutter">
		<div class="pad-left">
			<div class="note">
				<i class="fa fa-comment-o fa-fw"></i>
				<a class="off" href="{{ post.url }}">
				{{ post.title }}
				</a>
			</div>
			<div class="smallspacer"></div>
			<div class="smallnote">
				Posted
				{{ post.date | date: "%-d %b %Y" }}
        {% if post.author %}
        by <a class="off" href="
          {% for member in site.categories.team %}
            {% if member.title == post.author %}
              {{ member.url }}
            {% endif %}
          {% endfor %}
        ">
        {{ post.author }}
        </a>
        {% endif %}
        {% if post.authors %}
        by
        <a class="off" href="
          {% for member in site.categories.team %}
            {% if member.title == post.authors.first %}
              {{ member.url }}
            {% endif %}
          {% endfor %}
        ">
        {{ post.authors.first }}
        </a>
        and
        <a class="off" href="
          {% for member in site.categories.team %}
            {% if member.title == post.authors.last %}
              {{ member.url }}
            {% endif %}
          {% endfor %}
        ">
        {{ post.authors.last }}
        </a>
        {% endif %}
			</div>
			<div class="bigspacer"></div>
		</div>
	</div>
	{% endfor %}
</div>

<div class="spacer"></div>

<div class="row">
	<div class="col-lg-12">
		<div class="head">
			<a class="off" href="/papers/">Recent papers</a>
		</div>
		<div class="spacer"></div>
	</div>
</div>

<div class="row">
	{% for paper in site.categories.papers limit:4 %}
	<div class="col-lg-3 reduced-gutter">
		<div class="pad-left">
			<div class="note">
				<i class="fa fa-file-text-o fa-fw"></i>
				<a class="off" href="{{ paper.url }}">
				{{ paper.title }}
				</a>
			</div>
			<div class="smallspacer"></div>
			<div class="smallnote">
				Posted
				{{ paper.date | date: "%-d %b %Y" }}
			</div>
			<div class="bigspacer"></div>
		</div>
	</div>
	{% endfor %}
</div>

<div class="spacer"></div>

<div class="row">
	<div class="col-lg-12">
		<div class="head">
			<a class="off" href="/projects/">Active projects</a>
		</div>
		<div class="spacer"></div>
	</div>
</div>

<div class="row">
	{% for project in site.data.projects limit:4 %}
	<div class="col-lg-3 reduced-gutter">
		<div class="pad-left">
			<div class="note">
				<i class="fa fa-edit fa-fw"></i>
				<a class="off" href="{{ project.url }}">
				{{ project.title }} - {{ project.description }}
				</a>
			</div>
			<div class="smallspacer"></div>
			<div class="smallnote">
				Updated
				<a class="off" href="{{ project.commits.first.url }}">
				{{ project.commits.first.date | date: "%-d %b %Y" }}
				</a>
				by
				<a class="off" href="{{ project.commits.first.author_url }}">
				{{ project.commits.first.author_login }}
				</a>
			</div>
			<div class="bigspacer"></div>
		</div>
	</div>
	{% endfor %}
</div>

<div class="spacer"></div>

<div class="row">
	<div class="col-lg-12">
		<div class="head">
			Misc
		</div>
		<div class="spacer"></div>
	</div>
</div>

<div class="row">
	<div class="col-lg-12 reduced-gutter">
		<div class="pad-left">
			<ul class="list-inline">
				{% for page in site.categories.misc %}
				<li class="footernav list-inline-item">
					<i class="fa fa-angle-right"></i> <a class="off" href="{{ page.url }}">{{ page.title }}</a>
				</li>
				{% endfor %}
				<li class="footernav list-inline-item">
					<i class="fa fa-angle-right"></i> <a class="off" href="/talks/">Talks</a>
				</li>
			</ul>
		</div>
		<div class="spacer"></div>
	</div>
</div>

<div class="row">
  <div class="col-lg-12">
    <div class="float-lg-right" style="vertical-align: bottom; display: table-cell;">
      <a class="off" href="https://www.fredhutch.org/">
        <img width=185 src="/images/logos/logo_fred_hutch_horizontal_grayscale.png">
      </a>
      &nbsp; &nbsp; &nbsp; &nbsp;
      <a class="off" href="https://www.hhmi.org/">
        <img width=68 src="/images/logos/logo_hhmi_grayscale.png">
      </a>
    </div>
  </div>
</div>

<a style="display:none;" rel="me" href="https://mstdn.science/@trvrb">Hidden Mastodon Link for Verification</a>