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ChangeLog
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======================================================================
Originator: Bill Sacks
Date: 6-13-2017
Tag: cime5.3.0-alpha.27
Answer Changes: None
Tests: scripts_regression_tests on most PRs
Dependencies: CLM now needs to define its own LII and SSP tests
Brief Summary:
- Allow for distributed config_tests.xml file and move LII and SSP
tests out of cime. Also an unrelated minor bug fix in case.py
- Updates to CIME User Guide
- Fix XML schemas error for ALCF's Mira/Cetus
- Do not add empty user mods
- Clean up help text for query_testlists
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
d8ae575 Merge pull request #1682 from jedwards4b/config_tests_distribution
08cfb55 Merge pull request #1681 from bjsmith2014/master
d0d6648 Merge pull request #1679 from ESMCI/dqwu/fix_xml_schemas_alcf
876b6fe Merge pull request #1675 from billsacks/do_not_add_empty_user_mods
fdcac68 Merge pull request #1669 from billsacks/query_testlists_help
15768a0 Merge pull request #1671 from bjsmith2014/master
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/config_machines.xml
M config/cesm/config_files.xml
M config/config_tests.xml
M doc/source/users_guide/multi-instance.rst
M doc/source/users_guide/unit_testing.rst
D scripts/lib/CIME/SystemTests/lii.py
D scripts/lib/CIME/SystemTests/ssp.py
M scripts/lib/CIME/XML/tests.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/utils.py
M scripts/query_testlists
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-10-2017
Tag: cime5.3.0-alpha.26
Answer Changes: None
Tests: scripts_regression_tests.py J_TestCreateNewcase
scripts_regression_tests
Dependencies:
Brief Summary:
- Provides better description of CCSM_BGC xml variable for both ACME and
CESM
- Add a test to scripts_regression_tests.py to assure that instantiating a
case does not invoke a flush command.
- User compset fixes.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
f8eb8b4 Merge pull request #1670 from ESMCI/mvertens/fix_ccsm_bgc_desc
8ea2801 Merge pull request #1666 from jedwards4b/case_instantiate_test
383c1f5 Merge pull request #1667 from billsacks/user_compset_fixes
Modified files: git diff --name-status [previous_tag]
M scripts/create_newcase
M scripts/lib/CIME/case.py
M scripts/tests/scripts_regression_tests.py
M src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-8-2017
Tag: cime5.3.0-alpha.25
Answer Changes: None
Tests: scripts_regression_tests.py, SMS_D.f19_f19.F1850.cori-knl_intel
create_test cime_developer
Dependencies:
Brief Summary:
- Remove COMP_INTERFACE references to esmf and downcase the value.
- Make Flgl_qice attname consistent with name.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
aadee35 Merge pull request #1663 from jedwards4b/comp_interface_fix
f8f6221 Merge pull request #1662 from billsacks/fix_flgl
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/Makefile
M config/cesm/machines/Makefile
M scripts/lib/CIME/build.py
M scripts/lib/CIME/test_scheduler.py
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/shr/seq_flds_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-8-2017
Tag: cime5.3.0-alpha.24
Answer Changes: None
Tests: scripts_regression_tests.py
Dependencies:
Brief Summary:
- Convert user_mods_dir to abspath earlier.
- Update gnu modules on cheyenne to use openmpi.
- Fix failing builds on CIME master.
- Update cime users guide.
- Cleanup and fixes addressing running scripts_regression_tests.py on a mac.
- Update contents after create_case.
- Define out-of-the-box.
- Update case-basics
- Replace manage_case with query_case.
- Updates modules for cori-knl in cesm.
- Update cime users guide.
- Add a grid alias and new test to mct driver testlist.
- Merge of bjsmith changes to cime users guide.
- New match attribute that can be 'last' or 'first' for values match in
component.py
User interface changes:
- New match attribute elements that are children of <entry> nodes.
PR summary: git log --oneline --first-parent [previous_tag]..master
72198f2 Merge pull request #1657 from billsacks/usermods_relative_path
9ae4f31 Merge pull request #1661 from ESMCI/fischer/gnu_cheyenne
9a43e4b hot fix for issue 1656
75c1967 Merge pull request #1652 from bjsmith2014/master
86912da Merge pull request #1645 from jedwards4b/macport_issues
8517405 Update contents after create_case
435b426 Define out-of-the-box
cb41c58 Update case-basics
6e72a7b replace manage_case with query_case
19a4641 Merge pull request #1649 from jedwards4b/cori_update
543629e Merge pull request #1648 from bjsmith2014/master
0ab580e Merge pull request #1646 from ESMCI/fischer/TestGridUpdate
c26ec40 Merge pull request #1641 from bjsmith2014/master
0d1bbd8 Merge pull request #1636 from ESMCI/mvertens/new_component_matches
3b238a8 Merge pull request #1635 from bjsmith2014/master
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/Makefile
M config/cesm/config_grids.xml
M config/cesm/machines/Makefile
M config/cesm/machines/config_machines.xml
M config/xml_schemas/config_compsets.xsd
M doc/source/users_guide/building-a-case.rst
M doc/source/users_guide/case-basics.rst
M doc/source/users_guide/cime-internals.rst
M doc/source/users_guide/cloning-a-case.rst
M doc/source/users_guide/create-a-case.rst
M doc/source/users_guide/customizing-a-case.rst
M doc/source/users_guide/introduction-and-overview.rst
M doc/source/users_guide/optimizing-processor-layout.rst
M doc/source/users_guide/porting-cime.rst
M doc/source/users_guide/running-a-case.rst
M doc/source/users_guide/setting-up-a-case.rst
M doc/source/users_guide/troubleshooting.rst
M scripts/create_newcase
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/entry_id.py
M scripts/lib/CIME/XML/machines.py
M src/build_scripts/buildlib.csm_share
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/desp/cime_config/config_component.xml
M src/components/data_comps/dice/cime_config/config_component.xml
M src/components/data_comps/dlnd/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/drof/cime_config/config_component.xml
M src/components/data_comps/dwav/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_acme.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 6-4-2017
Tag: cime5.3.0-alpha.23
Answer Changes: None
Tests: scripts_regression_tests
pylint, unit-tests
Dependencies:
Brief Summary:
- Fixes a critical error for ERP tests.
- Change run_cmd_no_fail doctest to not match directory.
- Bring bless_test_results behavior into an exact match with create_test -g.
- Merge and update CIME users guide rst source.
- Fix a critical problem in code_checker that caused it to filter too many files.
- Copied doc dir into master in order to create a gh-pages orphan branch.
- Fix race condition with case XML files when using set_file and some other unrelated bugs.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
4525e19 Merge pull request #1639 from ESMCI/mvertens/python3string_fixes
4775d9a Change run_cmd_no_fail doctest to not match directory
4db9834 Merge pull request #1632 from ESMCI/jgfouca/generate_baseline_should_include_logs
4ba0b44 Merge pull request #1631 from bjsmith2014/master
37e4ed7 Merge pull request #1629 from ESMCI/jgfouca/pylint_fixes_and_more
6a7ffc2 Merge pull request #1623 from bertinia/master
65bd395 Merge pull request #1616 from ESMCI/jgfouca/fix_race
Modified files: git diff --name-status [previous_tag]
M .gitignore
A .nojekyll
M LICENSE.TXT
A doc/Makefile
A doc/source/_static
A doc/source/build_cpl/index.rst
A doc/source/build_cpl/introduction.rst
A doc/source/conf.py
A doc/source/conf.py_old
A doc/source/data_models/data-atm.rst
A doc/source/data_models/data-lnd.rst
A doc/source/data_models/data-model-science.rst
A doc/source/data_models/data-ocean.rst
A doc/source/data_models/data-river.rst
A doc/source/data_models/data-seaice.rst
A doc/source/data_models/data-wave.rst
A doc/source/data_models/design-details.rst
A doc/source/data_models/index.rst
A doc/source/data_models/input-streams.rst
A doc/source/data_models/introduction.rst
A doc/source/driver_cpl/bit-for-bit-flag.rst
A doc/source/driver_cpl/budgets.rst
A doc/source/driver_cpl/cplug-02.1-figx1.jpg
A doc/source/driver_cpl/design.rst
A doc/source/driver_cpl/driver_threading_control.rst
A doc/source/driver_cpl/grids.rst
A doc/source/driver_cpl/history-and-restarts.rst
A doc/source/driver_cpl/implementation.rst
A doc/source/driver_cpl/index.rst
A doc/source/driver_cpl/initialization-and-restart.rst
A doc/source/driver_cpl/introduction.rst
A doc/source/driver_cpl/multi-instance.rst
A doc/source/driver_cpl/namelist-overview.rst
A doc/source/driver_cpl/time-management.rst
A doc/source/index.rst
A doc/source/misc_tools/index.rst
A doc/source/users_guide/adding-cases.rst
A doc/source/users_guide/building-a-case.rst
A doc/source/users_guide/case-basics.rst
A doc/source/users_guide/cime-internals.rst
A doc/source/users_guide/cloning-a-case.rst
A doc/source/users_guide/create-a-case.rst
A doc/source/users_guide/customizing-a-case.rst
A doc/source/users_guide/faq/basics-a-basic-example.rst
A doc/source/users_guide/faq/basics-mpi-example.rst
A doc/source/users_guide/faq/basics-setting-up-a-branch-or-hybrid-run.rst
A doc/source/users_guide/faq/faq.rst
A doc/source/users_guide/index.rst
A doc/source/users_guide/introduction-and-overview.rst
A doc/source/users_guide/multi-instance.rst
A doc/source/users_guide/optimizing-processor-layout.rst
A doc/source/users_guide/porting-cime.rst
A doc/source/users_guide/running-a-case.rst
A doc/source/users_guide/setting-up-a-case.rst
A doc/source/users_guide/testing.rst
A doc/source/users_guide/troubleshooting.rst
A doc/source/users_guide/unit_testing.rst
A doc/source/what_cime/index.rst
A index.html
M scripts/Tools/normalize_cases
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/ncr.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/tests/scripts_regression_tests.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-28-2017
Tag: cime5.3.0-alpha.22
Answer Changes: Climate Changing for active two-way coupled GLC
Tests: Ran gnu TG smoke tests
aux_clm45 yellowstone_gnu
create_test cime_developer --queue long
scripts_regression_tests.py --fast
code_checker and scripts_regressions_tests.pr
CECO.hobart_pgi build
Dependencies:
Brief Summary:
- Remove no-longer-needed CISM_GNU setting.
- Add more error-checking with gnu in debug mode.
- Map SMB from lnd to glc using bilinear mapping with a conservation
correction.
- Do not eval words - only strings with whitespace.
- Change all python2 style strings to python3 style strings.
- Update the user_defined template.
- Update testreporter and change hobart queue to medium.
- Improve handling of hist comparisons in TestStatus.log.
- Update PGI compiler to 17.04 on hobart.
- Downscale build parellism on small machines.
User interface changes:
- New drv_in namelist variable: 'glc_renormalize_smb'
- Contents of TestStatus.log.
- Automatic downscale of builds.
PR summary: git log --oneline --first-parent [previous_tag]..master
2f6e683 Merge pull request #1620 from billsacks/remove_cism_gnu
4f08bb0 Merge pull request #1618 from billsacks/gnu_debug_flags
7a5242d Merge pull request #1609 from billsacks/lnd2glc_bilinear
21f2a20 Merge pull request #1614 from jedwards4b/eval_fix
2890518 Merge pull request #1608 from ESMCI/erichlf/3strings
fb3f533 Merge pull request #1611 from jedwards4b/update_user_defined
162ba85 Merge pull request #1610 from ESMCI/fischer/testreporter_fix
a9cc09c Merge pull request #1606 from ESMCI/jgfouca/improve_logs_for_compares
2deb949 Merge pull request #1602 from mnlevy1981/machines/hobart_pgi_ver
0b55ea3 Merge pull request #1605 from ESMCI/jgfouca/downscale_builds_on_small_machs
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/template.st_archive
M config/cesm/machines/Makefile
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.st_archive
M config/cesm/machines/userdefined_laptop_template/README.md
M config/cesm/machines/userdefined_laptop_template/config_compilers.xml
M config/cesm/machines/userdefined_laptop_template/config_machines.xml
M scripts/Tools/acme_check_env
M scripts/Tools/bless_test_results
M scripts/Tools/case.build
M scripts/Tools/case.cmpgen_namelists
M scripts/Tools/case.setup
M scripts/Tools/case_diff
M scripts/Tools/check_case
M scripts/Tools/check_input_data
M scripts/Tools/check_lockedfiles
M scripts/Tools/cime_bisect
M scripts/Tools/code_checker
M scripts/Tools/compare_namelists
M scripts/Tools/compare_test_results
M scripts/Tools/component_compare_baseline
M scripts/Tools/component_compare_copy
M scripts/Tools/component_compare_test
M scripts/Tools/component_generate_baseline
M scripts/Tools/cs.status
M scripts/Tools/jenkins_generic_job
M scripts/Tools/list_acme_tests
M scripts/Tools/normalize_cases
M scripts/Tools/pelayout
M scripts/Tools/pointclm/makepointdata.py
M scripts/Tools/pointclm/post_process.py
M scripts/Tools/pointclm/site_fullrun.py
M scripts/Tools/preview_run
M scripts/Tools/save_provenance
M scripts/Tools/simple_compare
M scripts/Tools/testreporter.py
M scripts/Tools/update_acme_tests
M scripts/Tools/xmlconvertors/config_pes_converter.py
M scripts/Tools/xmlconvertors/grid_xml_converter.py
M scripts/create_newcase
M scripts/fortran_unit_testing/python/printer.py
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/BuildTools/macrowriterbase.py
M scripts/lib/CIME/SystemTests/dae.py
M scripts/lib/CIME/SystemTests/eri.py
M scripts/lib/CIME/SystemTests/erio.py
M scripts/lib/CIME/SystemTests/erp.py
M scripts/lib/CIME/SystemTests/err.py
M scripts/lib/CIME/SystemTests/ers.py
M scripts/lib/CIME/SystemTests/ers2.py
M scripts/lib/CIME/SystemTests/homme.py
M scripts/lib/CIME/SystemTests/nck.py
M scripts/lib/CIME/SystemTests/ncr.py
M scripts/lib/CIME/SystemTests/nodefail.py
M scripts/lib/CIME/SystemTests/pea.py
M scripts/lib/CIME/SystemTests/pem.py
M scripts/lib/CIME/SystemTests/pet.py
M scripts/lib/CIME/SystemTests/pre.py
M scripts/lib/CIME/SystemTests/seq.py
M scripts/lib/CIME/SystemTests/ssp.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/system_tests_compare_two.py
M scripts/lib/CIME/XML/archive.py
M scripts/lib/CIME/XML/batch.py
M scripts/lib/CIME/XML/compilerblock.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/entry_id.py
M scripts/lib/CIME/XML/env_archive.py
M scripts/lib/CIME/XML/env_base.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/env_test.py
M scripts/lib/CIME/XML/files.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/XML/pes.py
M scripts/lib/CIME/XML/test_reporter.py
M scripts/lib/CIME/XML/testlist.py
M scripts/lib/CIME/XML/tests.py
M scripts/lib/CIME/XML/testspec.py
M scripts/lib/CIME/aprun.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/buildnml.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_cmpgen_namelists.py
M scripts/lib/CIME/case_setup.py
M scripts/lib/CIME/case_st_archive.py
M scripts/lib/CIME/case_test.py
M scripts/lib/CIME/check_input_data.py
M scripts/lib/CIME/check_lockedfiles.py
M scripts/lib/CIME/compare_namelists.py
M scripts/lib/CIME/compare_test_results.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/preview_namelists.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/simple_compare.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/test_status.py
M scripts/lib/CIME/test_utils.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two.py
M scripts/lib/CIME/tests/SystemTests/test_system_tests_compare_two_link_to_case2_output.py
M scripts/lib/CIME/tests/test_user_mod_support.py
M scripts/lib/CIME/user_mod_support.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/jenkins_generic_job.py
M scripts/lib/update_acme_tests.py
M scripts/tests/list_tests
M scripts/tests/scripts_regression_tests.py
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/CMakeLists.txt
M src/drivers/mct/main/map_lnd2glc_mod.F90
M src/drivers/mct/main/prep_glc_mod.F90
M src/drivers/mct/main/prep_lnd_mod.F90
D src/drivers/mct/main/vertical_gradient_calculator_2nd_order.F90
D src/drivers/mct/main/vertical_gradient_calculator_base.F90
D src/drivers/mct/main/vertical_gradient_calculator_factory.F90
M src/drivers/mct/shr/glc_elevclass_mod.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/drivers/mct/unit_test/CMakeLists.txt
M src/drivers/mct/unit_test/glc_elevclass_test/test_glc_elevclass.pf
D src/drivers/mct/unit_test/map_lnd2glc_test/CMakeLists.txt
D src/drivers/mct/unit_test/map_lnd2glc_test/test_map_lnd2glc.pf
M src/drivers/mct/unit_test/stubs/CMakeLists.txt
D src/drivers/mct/unit_test/stubs/vertical_gradient_calculator_constant.F90
D src/drivers/mct/unit_test/vertical_gradient_calculator_test/CMakeLists.txt
D src/drivers/mct/unit_test/vertical_gradient_calculator_test/README
D src/drivers/mct/unit_test/vertical_gradient_calculator_test/gradient_example.txt
D src/drivers/mct/unit_test/vertical_gradient_calculator_test/plot_gradient
D src/drivers/mct/unit_test/vertical_gradient_calculator_test/test_vertical_gradient_calculator_2nd_order.pf
D src/drivers/mct/unit_test/vertical_gradient_calculator_test/test_vertical_gradient_calculator_factory.pf
M src/share/test/unit/shr_string_test/test_shr_string.pf
M src/share/util/shr_string_mod.F90
M tools/load_balancing_tool/code/merge.py
M tools/load_balancing_tool/code/neos.py
M tools/statistical_ensemble_test/pyCECT/pyCECT.py
M tools/statistical_ensemble_test/pyCECT/pyEnsLib.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSum.py
M tools/statistical_ensemble_test/pyCECT/pyEnsSumPop.py
M tools/utils/find_circular_dependency.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-24-2017
Tag: cime5.3.0-alpha.21
Answer Changes: None
Tests: scripts_regression_tests.py
Dependencies:
Brief Summary:
- Fixed issue with GET_REFCASE not being set correctly.
- Don't ignore attributes for Compilers.get_value.
- Add ability for create_test to infer non-default machine from tests.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
25a7f27 Merge pull request #1604 from jedwards4b/refcase_fix
56fd28c Merge pull request #1598 from ESMCI/jgfouca/compiler_use_attribute
7003fe2 Merge pull request #1597 from ESMCI/jgfouca/infer_machine_from_tests
Modified files: git diff --name-status [previous_tag]
M scripts/create_test
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/case.py
M scripts/lib/update_acme_tests.py
M scripts/tests/scripts_regression_tests.py
======================================================================
Originator: Chris Fischer
Date: 5-24-2017
Tag: cime5.3.0-alpha.20
Answer Changes: None
Tests:
Dependencies:
Brief Summary:
- Add the f19_g17 maps, as wall as the ww3 <-> tx1v1 maps.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
0e9a1e0 Merge pull request #1594 from mnlevy1981/maps/update_ocean_maps
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
======================================================================
Originator: Chris Fischer
Date: 5-24-2017
Tag: cime5.3.0-alpha.19
Answer Changes: None
Tests: scripts_regression_tests --fast
Dependencies:
Brief Summary:
- Revert "Updated grid aliases in cesm/config_grids.xml"
- Build failures should not dump a full stacktracesince a code problem is
not the fault of CIME infrastructure.
Also, deprecate shell calls to date in favor of python interface to get
timestamp.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
0817502 Merge pull request #1596 from ESMCI/revert-1585-master
0ee6cb7 Merge pull request #1595 from ESMCI/jgfouca/improve_build_fail_msg
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/build.py
M src/drivers/mct/cime_config/buildnml
======================================================================
Originator: Chris Fischer
Date: 5-23-2017
Tag: cime5.3.0-alpha.18
Answer Changes: None
Tests: scripts_regression_tests.py, hand test xmlquery
ERS.f19_g16.X.yellowstone_intel
1850_DATM%CPLHIST_SLND_CICE_POP2%ECO_DROF%CPLHIST_SGLC_WW3
SMS_D_Mmpi-serial_Ld1.T42_T42.FSCM5A97.hobart_nag
Dependencies:
Brief Summary:
- Updated grid aliases in cesm/config_grids.xml.
- Fix logic in st_archive wrt DOUT_S_SAVE_INTERIM_RESTART_FILES.
- Improve comment for BASELINE status in TestStatus.
- Fix an issue with xmlquery when the --file and --listall flags are used
together.
- Remove grid attribute from compset elements.
- Update cime to support full X configuration.
- Remove empty <Proxy> tag from anlworkstation.
- DOCN aquaplanet from file and new A compsets with DOCN modes.
- Use %CPLHIST for DATM coupler hist forcing.
- Point to gx1v7 domain files that exist.
- Merged recent changes from MCSclimate/mpi-serial into CIME.
Includes new hvector functions.
User interface changes:
- TestStatus changes
PR summary: git log --oneline --first-parent [previous_tag]..master
e9a944c Merge pull request #1585 from alperaltuntas/master
568938d Merge pull request #1573 from jedwards4b/sta_fix
a4352db Merge pull request #1591 from ESMCI/jgfouca/improve_baseline_teststatus_comment
b4182ec Merge pull request #1593 from jedwards4b/xmlquery_and_config_compset
3189a86 Merge pull request #1592 from billsacks/compset_no_grid_attribute
7f6004f Merge pull request #1586 from apcraig/xcase
1ee8025 Merge pull request #1590 from ESMCI/sarich/anlworkstation-remove-proxy-tag
09c5136 Merge pull request #1582 from ESMCI/mvertens/docnmods
8657a18 Merge pull request #1578 from ESMCI/mvertens/datm_cplhist_mod
f109d77 Merge pull request #1567 from mnlevy1981/grids/fix_gx1v7_domain_datestamps
a8cc1a2 Merge pull request #1568 from gold2718/mpi-serial-import
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/config_machines.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_machines.xml
M config/xml_schemas/config_compsets.xsd
M scripts/Tools/xmlquery
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/case_st_archive.py
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/cime_config/namelist_definition_docn.xml
M src/components/data_comps/docn/docn_comp_mod.F90
M src/components/data_comps/drof/cime_config/namelist_definition_drof.xml
M src/components/xcpl_comps/xshare/dead_mct_mod.F90
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/config_compsets.xml
A src/drivers/mct/cime_config/testdefs/testmods_dirs/drv/default/shell_commands
M src/externals/mct/mpi-serial/Makefile
M src/externals/mct/mpi-serial/README
M src/externals/mct/mpi-serial/collective.c
A src/externals/mct/mpi-serial/error.c
A src/externals/mct/mpi-serial/ic_merge.c
M src/externals/mct/mpi-serial/mpi.h
M src/externals/mct/mpi-serial/mpif.h
M src/externals/mct/mpi-serial/tests/ftest_old.F90
M src/externals/mct/mpi-serial/type.c
======================================================================
Originator: Chris Fischer
Date: 5-18-2017
Tag: cime5.3.0-alpha.17
Answer Changes: None
Tests: ERI.f09_g17.B1850.cheyenne_intel.allactive-defaultio
scripts_regression_test.py
Dependencies:
Brief Summary:
- Rearranges code for lookups a little in case.py.
- Undo recent change to land domain.
- Fix config pes converter.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
d33bc68 Merge pull request #1561 from jedwards4b/lookups_cleanup
3cc8bac Merge pull request #1560 from jedwards4b/undo_land_domain_change
c3458a8 Merge pull request #1557 from ESMCI/sarich/fix-config-pes-converter
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M scripts/Tools/xmlconvertors/config_pes_converter.py
M scripts/Tools/xmlconvertors/grid_xml_converter.py
M scripts/lib/CIME/case.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-17-2017
Tag: cime5.3.0-alpha.16
Answer Changes: None
Tests: scripts_reggression_tests.py
Dependencies:
Brief Summary:
- Fix bug which was preventing config_compsets from modifying xml
variables.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
d4e9285 Merge pull request #1559 from jedwards4b/compset_var_settings
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M scripts/lib/CIME/case.py
======================================================================
Originator: Jim Edwards
Date: 5-17-2017
Tag: cime5.3.0-alpha.15
Answer Changes: None
Tests: scripts_regression_tests.py
d581e52 (HEAD, origin/master, origin/HEAD, master) Merge pull request #1554 from jedwards4b/eri_histfile_cleanup
906c88a Merge pull request #1556 from ESMCI/mvertens/fix_usermods
d404d35 Merge pull request #1551 from jedwards4b/multi_component_user_mods
7355f9d Merge pull request #1547 from ESMCI/mvertens/convert_stream_tabs
99c59b4 Merge pull request #1552 from jedwards4b/user_compset_message_change
7aebc3e Merge pull request #1553 from jedwards4b/memory_usage_correction
9e81110 Merge pull request #1548 from jedwards4b/improve_user_compset_error_checking
98d386f Merge pull request #1546 from jedwards4b/improve_user_compset_error_checking
980f15d Merge pull request #1542 from jedwards4b/fix_env_run_check_in_tests
======================================================================
Originator: Chris Fischer
Date: 5-15-2017
Tag: cime5.3.0-alpha.14
Answer Changes: None
Tests: scripts_regression_tests.py
hand test 2000_CAM50_SLND_SICE_DOCN%AQP3_SROF_SGLC_SWAV
ERR.f09_g16.B1850.cheyenne_intel.allactive-defaultio
Dependencies:
Brief Summary:
- Update mct testlist from yellowstone to cheyenne.
- Remove xrof_flood_mode from config_grids assure exactly two grids.
- Add ability to remove tabs in shr_string_lalign.
- Timing should use largest ncpl value not atm value.
- Remove user_mods support from the config_compsets.xml file and adds it
to the config_component.xml file.
- Define the list of expected attributes to the mpirun command so that the
all do not need to be passed in.
- Avoid defining non-existant variable MASK_DOMAIN_FILE.
- Make sure that case.set_value is setting a valid variable and error out
if it is not.
- Improve error message for incorrect grid alias.
- Add a case.test --reset option to manually reset a test to initial
conditions.
- Improve error messages for modify_via_xml and cannot_modify_by_user_nl.
- Only create rest directories if they are going to be populated.
- Allow the user the option of skipping the xmllint validation of cime xml
files.
User interface changes:
- Add --reset option to case.test.
PR summary: git log --oneline --first-parent [previous_tag]..master
71b8edb Merge pull request #1537 from ESMCI/fischer/testlist_cheyenne
7494139 Merge pull request #1535 from jedwards4b/xrof_flood_mode_fixagain
5894c4d Merge pull request #1531 from ESMCI/mvertens/remove_stream_tabs
9f92bf0 Merge pull request #1524 from jedwards4b/correct_ncpl_in_timing
62fa492 Merge pull request #1523 from jedwards4b/user_mods_in_component
a5e9bc0 Merge pull request #1521 from jedwards4b/define_expected_attributes
cecbbd5 Merge pull request #1518 from jedwards4b/no_mask_domain
1bbbfc2 Merge pull request #1517 from jedwards4b/set_value_valid
3bcfbe4 Merge pull request #1515 from jedwards4b/grid_alais_message
94455fc Merge pull request #1502 from jedwards4b/reset_test_case
6ebd989 Merge pull request #1514 from billsacks/modify_via_xml_error_msg
9d865d5 Merge pull request #1511 from jedwards4b/no_interum_dirs
144cc38 Merge pull request #1509 from jedwards4b/allowed_schema_skip
Modified files: git diff --name-status [previous_tag]
M config/acme/machines/template.case.test
M config/cesm/config_grids.xml
M config/cesm/machines/template.case.test
M config/xml_schemas/config_compsets.xsd
M config/xml_schemas/env_mach_specific.xsd
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/namelist_definition.py
M scripts/lib/CIME/XML/pes.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_st_archive.py
M scripts/lib/CIME/case_submit.py
M scripts/lib/CIME/case_test.py
M scripts/lib/CIME/get_timing.py
M src/build_scripts/buildlib.mct
M src/drivers/mct/cime_config/testdefs/testlist_drv.xml
M src/share/test/unit/shr_string_test/test_shr_string.pf
M src/share/util/shr_string_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-10-2017
Tag: cime5.3.0-alpha.13
Answer Changes: Round Off
Tests: aux_glc test suite
Dependencies:
Brief Summary:
- New CISM mapping files.
- Fix pylint issues.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
67c14ca Merge pull request #1478 from billsacks/cism_new_mapping_files
affab50 fix pylint issue
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M scripts/lib/CIME/case.py
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-9-2017
Tag: cime5.3.0-alpha.12
Answer Changes: None
Tests: scripts_regression_tests.py
hand test of xmlquery
ERR.f09_g16.B1850
code_checker
create_test cime_developer
SMS.ne30z60_ne30.F1850
ERS2 test
SMS_Mmpi-serial.f19_g17.X.hobart_intel
Dependencies:
Brief Summary:
- Fixes building when certain path variables have a trailing /
- xmlquery options --file and --listall were not working together, now
they are.
- Fix for SOM bug introduced in PR #1451
- Add new grid aliases for gx3v7 and usgs masks.
- Improve ERR by removing rundir files and recopying from sta rest
directory.
- Change allows the user to specify a file in either the config_pes.xml
or the env_mach_pes.xml format.
- Add skip-preview-namelist to case.submit and case_run.
- Simplify settings in CCSM_CO2_PPMV in config_components_cesm.xml.
- Fix force queue.
- Fix pylint errors.
- Fix bug where file drv_flds_in wasn't being closed after being opened.
- Add missing term for NET WATER BUDGET tables.
- Add some major NCAR contributors to cime.
- Fixes for zlev problem.
- Renamed manage_case to query_config.
- Make alternative implementation for ERS.
- Remove empty mpi-serial settings from config_machines.xml.
- Only warning for single dash.
- Additional fields needed for environment_variables.
- Template files were not correctly upgraded to the new argument oarsing.
- Fix ACME config_machines.xml format.
- Add new runoff -> gx1v6 maps.
- Removed old ncl utilities. Changed the random pertlim generator to allow
more (and flexible) number of ensemble members. Added the capability to
generate 9 time step ensembles for UF-CAM-ECT.
User interface changes:
- xmlquery --file and --listall can now be used together.
- --pesfile argument in create_newcase
- Added --skip-preview-namelist to case.build and
template.case.run
- manage_case -> query_config
--compset -> --compsets
--machine -> --machines
added 'all' option for --compsets
added 'current' and to --machines
- New ERS2 test type.
- Print a warning to stdout if single dash used with multi-char arg.
PR summary: git log --oneline --first-parent [previous_tag]..master
56f5df26 Merge pull request #1495 from ESMCI/mfdeakin-sandia/fix_build_paths
e234bc6e Merge pull request #1504 from jedwards4b/xmlquery_again
10fbc430 Merge pull request #1501 from ESMCI/mvertens/somfix
3beac4ab Merge pull request #1500 from ESMCI/fischer/grid_mask
1ca58a07 Merge pull request #1499 from jedwards4b/err_test_improvement1
18112d92 Merge pull request #1494 from jedwards4b/pesfile_usage
cdcb096b Merge pull request #1471 from ESMCI/erichlf/case_submit/skip_pnl
5684406d Merge pull request #1487 from ESMCI/mvertens/fix_ccsm_co2_ppmv
99f1f5ba Merge pull request #1496 from ESMCI/jgfouca/fix_force_queue
93a452a9 Merge pull request #1490 from ESMCI/jgfouca/fix_pylint_errs
cf204753 Merge pull request #1491 from ESMCI/fischer/readnl_close
0847f8df Merge pull request #1427 from jtruesdal/water_budget
893a6135 Merge pull request #1458 from billsacks/ncar_credits
653dd297 Merge pull request #1469 from ESMCI/mvertens/fixzlev
68f4b5d7 Merge pull request #1388 from ESMCI/erichlf/manage_case
b661f5bd Merge branch 'jgfouca/alternative_impl_for_ers' (PR #1482)
ef7d0fe9 Merge pull request #1482 from ESMCI/jgfouca/alternative_impl_for_ers
7aadd49b Merge pull request #1454 from jedwards4b/mpi-serial-cleanup
4d4281f2 Merge pull request #1474 from jedwards4b/no_error_warning
34d00048 Minor hotfix for ACME config_machines.xml
71064281 Merge pull request #1477 from jedwards4b/env_vars_attributes
9c463bf9 Merge pull request #1476 from ESMCI/jgfouca/fix_acme_template_files
25ce0223 Merge pull request #1475 from
ESMCI/jgfouca/fix_acme_config_mach_xml_format
baaa2cc3 Merge pull request #1472 from mnlevy1981/mapping/runoff_to_gx1v6
00c22c0c Merge pull request #1457 from allibco/master
Modified files: git diff --name-status [previous_tag]
M README.md
M config/acme/machines/config_machines.xml
M config/acme/machines/template.case.run
M config/acme/machines/template.case.test
M config/cesm/config_grids.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/template.case.run
M config/config_tests.xml
M config/xml_schemas/env_mach_specific.xsd
M scripts/Tools/case.submit
M scripts/Tools/xmlquery
M scripts/create_newcase
M scripts/create_test
M scripts/lib/CIME/SystemTests/err.py
A scripts/lib/CIME/SystemTests/ers2.py
M scripts/lib/CIME/XML/component.py
M scripts/lib/CIME/XML/compsets.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_mach_pes.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case.py
M scripts/lib/CIME/case_run.py
M scripts/lib/CIME/case_submit.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
D scripts/manage_case
A scripts/query_config
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.gptl
M src/components/data_comps/docn/cime_config/config_component.xml
M src/components/data_comps/docn/docn_comp_mod.F90
M src/components/stub_comps/satm/cime_config/config_component.xml
M src/components/stub_comps/sesp/cime_config/config_component.xml
M src/components/stub_comps/sglc/cime_config/config_component.xml
M src/components/stub_comps/sice/cime_config/config_component.xml
M src/components/stub_comps/slnd/cime_config/config_component.xml
M src/components/stub_comps/socn/cime_config/config_component.xml
M src/components/stub_comps/srof/cime_config/config_component.xml
M src/components/stub_comps/swav/cime_config/config_component.xml
M src/components/xcpl_comps/xatm/cime_config/config_component.xml
M src/components/xcpl_comps/xglc/cime_config/config_component.xml
M src/components/xcpl_comps/xice/cime_config/config_component.xml
M src/components/xcpl_comps/xlnd/cime_config/config_component.xml
M src/components/xcpl_comps/xocn/cime_config/config_component.xml
M src/components/xcpl_comps/xrof/cime_config/config_component.xml
M src/components/xcpl_comps/xwav/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/main/seq_diag_mct.F90
M src/drivers/mct/shr/seq_drydep_mod.F90
M src/drivers/mct/shr/shr_ndep_mod.F90
M tools/Readme.configure
M tools/configure
A tools/mapping/gen_mapping_files/runoff_to_ocn/map_r05_to_gx1v6_nnsm_e1000r300.nml
A tools/mapping/gen_mapping_files/runoff_to_ocn/map_rx1_to_gx1v6_nnsm_e1000r300.nml
A tools/statistical_ensemble_test/README
M tools/statistical_ensemble_test/ensemble.sh
D tools/statistical_ensemble_test/ncl_library/Zscore.ncl
D tools/statistical_ensemble_test/ncl_library/area_avg.ncl
D tools/statistical_ensemble_test/ncl_library/create_ensemble.ncl
D tools/statistical_ensemble_test/ncl_library/global.ncl
D tools/statistical_ensemble_test/ncl_library/plot_rmsz.ncl
D tools/statistical_ensemble_test/ncl_library/print.ncl
D tools/statistical_ensemble_test/ncl_library/rmsz.ncl
D tools/statistical_ensemble_test/ncl_library/vinterp.ncl
M tools/statistical_ensemble_test/single_run.sh
D tools/statistical_ensemble_test/test_run_against_ensemble.ncl
D tools/statistical_ensemble_test/validation_test.sh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 5-3-2017
Tag: cime5.3.0-alpha.11
Answer Changes: None
Tests:
- scrtips_regression_tests.py